PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004057-RA_Salv
Common NameMYB82
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 322aa    MW: 35862.6 Da    PI: 7.4214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004057-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.8e-191465148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                           rg WT+eEd++l  +++q+G+++W++I+++ g    + R++k+c++rw +yl
  SMil_00004057-RA_Salv 14 RGQWTPEEDQKLSSYIAQHGTRNWRLIPKHAGshlrLQRCGKSCRLRWTNYL 65
                           89************************************************97 PP
2Myb_DNA-binding45.71.5e-1472114246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++ E++ +v ++  lG++ W+ Ia+ ++ gRt++++k++w++
  SMil_00004057-RA_Salv  72 GQFSEAEEQTIVTLHSVLGNR-WAVIAAQLP-GRTDNDVKNHWNT 114
                            789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.611969IPR017930Myb domain
SuperFamilySSF466899.54E-2911112IPR009057Homeodomain-like
SMARTSM007173.3E-141367IPR001005SANT/Myb domain
PfamPF002491.5E-171465IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241572IPR009057Homeodomain-like
CDDcd001672.43E-121765No hitNo description
SMARTSM007173.3E-1370118IPR001005SANT/Myb domain
PROSITE profilePS5129419.8970120IPR017930Myb domain
PfamPF002493.6E-1372114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2373120IPR009057Homeodomain-like
CDDcd001678.84E-1074116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRLPCCEKD NVKRGQWTPE EDQKLSSYIA QHGTRNWRLI PKHAGSHLRL QRCGKSCRLR  60
WTNYLRPDLK HGQFSEAEEQ TIVTLHSVLG NRWAVIAAQL PGRTDNDVKN HWNTKLKKKL  120
SGMGIDPVTH KPFSHLITEI ATLPPPQVPN LAEAALGCFK DEMLHLLTKR RINIQLQQYG  180
GGGVPAGMKH EDGKDETIEK IKFGLSKAIK ETGMPPLDKP WEPVGATSGY IGGVFGSFPG  240
SDNGFHYELA SLDNEGGASP WGQSMCMAAE HHHGGLHEKV AEEERGGEDS VNRKETRNGE  300
SMFNSECSLW DLQSNDLMNP MI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30141207108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594360.0KF059436.1 Salvia miltiorrhiza MYB-related transcription factor (MYB82) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554535.11e-164transcription factor MYB80
SwissprotQ7XQN11e-110MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A059PRT50.0A0A059PRT5_SALMI; MYB-related transcription factor
STRINGVIT_19s0015g01280.t011e-157(Vitis vinifera)
STRINGcassava4.1_021042m1e-157(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-107myb domain protein 103
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]