PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00004056-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 344aa MW: 37974.4 Da PI: 5.5154

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00004056-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102.1	5.3e-32	80	171	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka+l vk +++gkw+v+ +++eHnH SMil_00004056-RA_Salv 80 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKVQESGKWVVSGFVKEHNH 167 **************************************998888545677889***************************** PP FAR1 88 elap 91 el+p SMil_00004056-RA_Salv 168 ELVP 171 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-30	80	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MENGVIEFDI GLSGGDDGID IEPPNDDGDI PDGSSNDANS LGSGSGETSF SLQVYIPEGD 60 HDLEPYEGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RKDGAIIQRS FVCAKEGFRN 120 LNEKRTKDRE IKRPRTVTRV GCKASLSVKV QESGKWVVSG FVKEHNHELV PPDQVHCLRS 180 HRQISGPAKT LIDTLQAAGM GPRRIIYNTL RHEAFKFVDE GAESLDSYNV AMAALAEASN 240 KVALGIKNEG KSSLTNGRMR DVSARIGVQA NQCTAEVPGS SAQQLSEDDM DQKINELSMD 300 LDRANRKCEV YRTNLLSLLK DIEDHKQRLS VEVQNIKLSM KDSL

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MENGVIEFDI GLSGGDDGID IEPPNDDGDI PDGSSNDANS LGSGSGETSF SLQVYIPEGD  60
HDLEPYEGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RKDGAIIQRS FVCAKEGFRN  120
LNEKRTKDRE IKRPRTVTRV GCKASLSVKV QESGKWVVSG FVKEHNHELV PPDQVHCLRS  180
HRQISGPAKT LIDTLQAAGM GPRRIIYNTL RHEAFKFVDE GAESLDSYNV AMAALAEASN  240
KVALGIKNEG KSSLTNGRMR DVSARIGVQA NQCTAEVPGS SAQQLSEDDM DQKINELSMD  300
LDRANRKCEV YRTNLLSLLK DIEDHKQRLS VEVQNIKLSM KDSL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552571.1	1e-126	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020552572.1	1e-126	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020552573.1	1e-126	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	3e-89	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A445LWN7	1e-136	A0A445LWN7_GLYSO; Protein FAR1-RELATED SEQUENCE 5
STRING	Migut.O00582.1.p	3e-99	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-80	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]