PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004007-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 158aa    MW: 17678.1 Da    PI: 7.8941
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004007-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601421.9e-44121111100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+C+++C++apyfpae+p kfa vhk+FGasnv+k+l++lpee+r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq++
  SMil_00004007-RA_Salv  12 PCAACKLLRRRCSQECIFAPYFPAEEPGKFAGVHKVFGASNVSKMLQELPEEHRGDAVSSMVYEANARMRDPVYGCVGAISYLQQQID 99 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                             l+++lal+++e
  SMil_00004007-RA_Salv 100 ALRQQLALTQAE 111
                            *******99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.63411112IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-4412109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEVSRKQNAS SPCAACKLLR RRCSQECIFA PYFPAEEPGK FAGVHKVFGA SNVSKMLQEL  60
PEEHRGDAVS SMVYEANARM RDPVYGCVGA ISYLQQQIDA LRQQLALTQA EMLHLRLRNQ  120
ATSPTNSYTL LSHSKPSNFD MDMGVDHASF RESMWSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4681257124LOB family transfactor Ramosa2.1
5ly0_B2e-4681257124LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507655.11e-76LOB domain-containing protein 4 isoform X2
SwissprotQ9SHE97e-63LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A4D9B0344e-96A0A4D9B034_SALSN; Uncharacterized protein
STRINGGorai.010G170700.18e-76(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-65LOB domain-containing protein 4