PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004007-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 17678.1 Da PI: 7.8941 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142 | 1.9e-44 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C+++C++apyfpae+p kfa vhk+FGasnv+k+l++lpee+r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq++ SMil_00004007-RA_Salv 12 PCAACKLLRRRCSQECIFAPYFPAEEPGKFAGVHKVFGASNVSKMLQELPEEHRGDAVSSMVYEANARMRDPVYGCVGAISYLQQQID 99 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 l+++lal+++e SMil_00004007-RA_Salv 100 ALRQQLALTQAE 111 *******99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.634 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.9E-44 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MEVSRKQNAS SPCAACKLLR RRCSQECIFA PYFPAEEPGK FAGVHKVFGA SNVSKMLQEL 60 PEEHRGDAVS SMVYEANARM RDPVYGCVGA ISYLQQQIDA LRQQLALTQA EMLHLRLRNQ 120 ATSPTNSYTL LSHSKPSNFD MDMGVDHASF RESMWSST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-46 | 8 | 125 | 7 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-46 | 8 | 125 | 7 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507655.1 | 1e-76 | LOB domain-containing protein 4 isoform X2 | ||||
Swissprot | Q9SHE9 | 7e-63 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A4D9B034 | 4e-96 | A0A4D9B034_SALSN; Uncharacterized protein | ||||
STRING | Gorai.010G170700.1 | 8e-76 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-65 | LOB domain-containing protein 4 |