PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003982-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 317aa    MW: 33767 Da    PI: 8.4186
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003982-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.12.7e-33401651123
                    TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas..n 84 
                            a+g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl +a  +i el+  +s+ a+++  +   +  + +  +
  SMil_00003982-RA_Salv  40 ATGGKDRHSKVLTSRGLRDRRVRLSVNTAIEFYDLQDRLGYDQPSKAVEWLLAAAAGSIAELPPMNSPFAESAaaS--GRMMALDsvF 125
                            5899*************************************************************77777444221..2222111122 PP

                    TCP  85 sssg....kaaksaakskksqksaasalnlakesrakararar 123
                               +    +a ks+  s++s++s+ s l++a++ +ak+r++++
  SMil_00003982-RA_Salv 126 ---DggeaAAGKSSIGSSSSETSKGSGLSIARSDKAKERENEK 165
                            ...1343355555558888889999889999999988888754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3242160IPR005333Transcription factor, TCP
PROSITE profilePS5136930.55543101IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNDDDEGENR RSNPNKGGSA DPVGGLYGWP SSRIVRVSRA TGGKDRHSKV LTSRGLRDRR  60
VRLSVNTAIE FYDLQDRLGY DQPSKAVEWL LAAAAGSIAE LPPMNSPFAE SAAASGRMMA  120
LDSVFDGGEA AAGKSSIGSS SSETSKGSGL SIARSDKAKE RENEKSSYVA SFTELLSGGG  180
GGINCFNGRD QRPVNEENSN FFLKFPTDYF SRGLSAPQAT ASPSPLLFSA AAELQPPFPF  240
ASDQSVSAVN AANPSAINRG TLQSNSSSPP HFPPNFFGSG NHRHFFPGFD SRLQLYYGDA  300
DQGNDGRNSG PKRKDKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2148102155Putative transcription factor PCF6
5zkt_B2e-2148102155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012830233.17e-77PREDICTED: transcription factor TCP2-like
RefseqXP_012842244.17e-76PREDICTED: transcription factor TCP2-like isoform X1
TrEMBLA0A4D9AS472e-81A0A4D9AS47_SALSN; Uncharacterized protein
STRINGMigut.H01353.1.p3e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.27e-40TCP family protein