PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003958-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C3H | ||||||||
Protein Properties | Length: 208aa MW: 22929.3 Da PI: 10.4249 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.6 | 3.3e-06 | 51 | 74 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++Gd C+F H SMil_00003958-RA_Salv 51 KSKPCTKFFSTSGCSFGDACHFQH 74 7789*******************9 PP | |||||||
2 | zf-CCCH | 25.9 | 1.7e-08 | 111 | 136 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC++ C+yG++C+FaH++ SMil_00003958-RA_Salv 111 KTKLCNRLKTPEGCRYGNKCHFAHSE 136 99**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.87 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.967 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 50 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-4 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-6 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-13 | 107 | 141 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-8 | 108 | 140 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.07 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.52 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 111 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MDFGRKRGRA DAAFSGNGGF KRSREVESHL IRDMAYVSVE MDSFTTGVGS KSKPCTKFFS 60 TSGCSFGDAC HFQHYVPGYN AHTQLANMGV NVAAPVGRNT SFSDSPAPNM KTKLCNRLKT 120 PEGCRYGNKC HFAHSEMELG KPATPGFEDQ RMRGGYSNAM RHPNMLWVTL VRQQLRKSAL 180 TPPLLGLLLG KMVPTQSRFV GRLVLSFP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 9 | GRKRGRA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087061.1 | 2e-75 | zinc finger CCCH domain-containing protein 14 isoform X1 | ||||
Swissprot | Q7F8R0 | 1e-37 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A022QHP9 | 9e-67 | A0A022QHP9_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B01362.1.p | 2e-67 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-26 | C3H family protein |