PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00003942-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 534aa MW: 58194.3 Da PI: 5.0335

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003942-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	169	229	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ SMil_00003942-RA_Salv 169 PDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNAA 229 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	154	226	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-32	171	227	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	173	227	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	175	211	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
LVYIRKERER ESEIEVEGIM REKMSEVKDP KIKLFGKTIE LPDTASEAAV AAEKAGEAAQ 60 SFDAAGDDDS IQDPPCSSNS MIEENDLNGD AEDQESNKNQ SGLKQDDKEE DQAQPLTSDE 120 LKDSDTTPCI VADPKALSAD SDAGPVQSSK MEEDQTETSN SQDKTLKKPD KILPCPRCNS 180 MDTKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKNAAS QFRHLTVPNV 240 LQNARVDLQN GIHHPVLSPN GTVITFNSDT PLCESMVSVL NIADKTVRSN LRNGFHRPEE 300 LGMETSHGHK ENGDDHSSGS STTAASSKDE VGKTGLPEPI PNNHPFPPQV PCFPGAPWPY 360 PWHSVQWTAP ISPPNFPPGG FALPFYPTAP PYWGCAVPGP WNVPWIIPPT PSQSHTPPNS 420 GPNSPTLGKH SRDDNTLKPV NPEDASEKES NPEKCLWVPK TLRIDDPGEA AKSSIWATLG 480 IKNERADSVG GGGLFKAFQS QSKGDEKAHA SETSTVLQAN PAALSRSLSF HENS

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

LVYIRKERER ESEIEVEGIM REKMSEVKDP KIKLFGKTIE LPDTASEAAV AAEKAGEAAQ  60
SFDAAGDDDS IQDPPCSSNS MIEENDLNGD AEDQESNKNQ SGLKQDDKEE DQAQPLTSDE  120
LKDSDTTPCI VADPKALSAD SDAGPVQSSK MEEDQTETSN SQDKTLKKPD KILPCPRCNS  180
MDTKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKNAAS QFRHLTVPNV  240
LQNARVDLQN GIHHPVLSPN GTVITFNSDT PLCESMVSVL NIADKTVRSN LRNGFHRPEE  300
LGMETSHGHK ENGDDHSSGS STTAASSKDE VGKTGLPEPI PNNHPFPPQV PCFPGAPWPY  360
PWHSVQWTAP ISPPNFPPGG FALPFYPTAP PYWGCAVPGP WNVPWIIPPT PSQSHTPPNS  420
GPNSPTLGKH SRDDNTLKPV NPEDASEKES NPEKCLWVPK TLRIDDPGEA AKSSIWATLG  480
IKNERADSVG GGGLFKAFQS QSKGDEKAHA SETSTVLQAN PAALSRSLSF HENS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098639.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A4D8Y8A3	0.0	A0A4D8Y8A3_SALSN; Dof zinc finger protein DOF5.5
STRING	VIT_14s0108g00980.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-103	cycling DOF factor 2