PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003830-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 722aa    MW: 79128.6 Da    PI: 5.8892
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003830-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.3e-2058113156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  SMil_00003830-RA_Salv  58 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 113
                            688999***********************************************998 PP
2START217.15.9e-682464661206
                            HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                  START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                            ela +a++el+++a+ +ep+Wv       e + +de++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +   
  SMil_00003830-RA_Salv 246 ELAVAAMEELIRMAQTGEPLWVPNTdglgEVLSEDEYVRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDTN-QWSSVFSsi 332
                            57899*******************9999999************999********************************.********* PP

                            ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                  START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                              +a+tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ +    + +++++pSg+li++
  SMil_00003830-RA_Salv 333 vsRAMTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtREIYFVRYCKQHGDGTWAVVDVSLDNLRPAT----ISKCRRRPSGCLIQE 416
                            *******************************************************************98....689999********* PP

                            ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                            ++ng+skvtwvehv++++r +h+++++lv+sgla+ga++wva l+rqce+
  SMil_00003830-RA_Salv 417 LPNGYSKVTWVEHVEVDDRAVHNIYKPLVNSGLAFGARRWVAILDRQCER 466
                            ************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2141109IPR009057Homeodomain-like
SuperFamilySSF466895.43E-1943115IPR009057Homeodomain-like
PROSITE profilePS5007116.61755115IPR001356Homeobox domain
SMARTSM003891.1E-1856119IPR001356Homeobox domain
CDDcd000862.63E-1858116No hitNo description
PfamPF000462.0E-1758113IPR001356Homeobox domain
PROSITE profilePS5084844.892237469IPR002913START domain
SuperFamilySSF559613.02E-36238468No hitNo description
CDDcd088752.09E-131241465No hitNo description
SMARTSM002349.6E-66246466IPR002913START domain
PfamPF018526.1E-57247466IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-5343455IPR023393START-like domain
SuperFamilySSF559617.56E-25486714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MFQPNMFESH HHLLEMGNKT PENDMDLIRD DDYESKSGTD NMEAASGDDQ DPNDRPKKKR  60
YHRHTQHQIQ EMESFFKECP HPDDKQRKEL GRRLGLEPLQ VKFWFQNKRT QMKSQHERHE  120
NTQLRNENEK LRAENIRYKE ALGNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PMLSYPQLSS GASRSLDLGV GSFGANTGLS GEIFGASDLL RSVSGPSDAD  240
KPIIIELAVA AMEELIRMAQ TGEPLWVPNT DGLGEVLSED EYVRTFPRGI GPKPLGLKSE  300
ASRESAVVIM NHINLVEILM DTNQWSSVFS SIVSRAMTLE VLSTGVAGNY NGALQVMTAE  360
FQVPSPLVPT REIYFVRYCK QHGDGTWAVV DVSLDNLRPA TISKCRRRPS GCLIQELPNG  420
YSKVTWVEHV EVDDRAVHNI YKPLVNSGLA FGARRWVAIL DRQCERLASL MASNISAGDV  480
GVISSPKGRK SMLKLAERMV MSFCTGVGAS TAHTWTTLSG SGADDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWLPVPPKRV FDFLRNENSR NEWDILSNGG LVQEMAHIAN GRDPGNSVSL  600
LRVNSANSSQ SNMLILQESC SDATGSYVIY APVDIIAMNV VLSGGDPDYV ALLPSGFAIL  660
PDGANDQTGG ISEVGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKGAVLND  720
AA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A4D9AY160.0A0A4D9AY16_SALSN; Homeobox-leucine zipper protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]