PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003712-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 380aa    MW: 41414 Da    PI: 8.7161
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003712-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-16128170145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            rg++T++E  l+++++++lG++ W+ Ia++++ gRt++++k++w+
  SMil_00003712-RA_Salv 128 RGNFTPQEAALIIELHRLLGNR-WAQIAKHLP-GRTDNEVKNFWN 170
                            89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-11108134IPR009057Homeodomain-like
SuperFamilySSF466895.13E-21108178IPR009057Homeodomain-like
PROSITE profilePS500904.054109122IPR017877Myb-like domain
PROSITE profilePS5129426.225123177IPR017930Myb domain
SMARTSM007172.4E-16127175IPR001005SANT/Myb domain
PfamPF002493.9E-15128171IPR001005SANT/Myb domain
CDDcd001675.15E-12130170No hitNo description
Gene3DG3DSA:1.10.10.604.6E-21135173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MRNSSTTSPP TAMAAGALSQ DSQVSLSLSH CPVFELMTKA FAYTSFFTWR PPTVSAVTYH  60
GGHTRALSQD SQLSLSHSRQ GRTRKKTSIK LTRLFACKRD DLMCVGLQRC GKSCRLRWIN  120
YLRPDLKRGN FTPQEAALII ELHRLLGNRW AQIAKHLPGR TDNEVKNFWN SSIKKKIMAH  180
HSMSSSALIS SSNLQHPNLI INNNLIIPNN PQIDQIIIPN SQMEQLGFQI DPNLTTYAPN  240
LALIHHTSAP NNSLDSSVSD LQSWSSQALK QDNGAVLGYD GGYDQDSALL DALMPELAEM  300
AKGLEFGVSA NAAVATQIED GLDSGFGPLH PNQIKNISSL MASFVPPPPP AAASLPPVTY  360
LPPLPGSFVS PSSWGINHGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-258917719108B-MYB
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594110.0KF059411.1 Salvia miltiorrhiza MYB-related transcription factor (MYB57) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072535.17e-80transcription factor MYB39
TrEMBLA0A2G9HXP03e-79A0A2G9HXP0_9LAMI; Transcription factor, Myb superfamily
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1589635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-43myb domain protein 26