PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003677-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 278aa    MW: 32098.7 Da    PI: 4.6399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003677-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19108160156
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                            ++++GVr+++ +grW+AeIrdp     + +r++lg+++taeeAa  ++aa+ +++g+
  SMil_00003677-RA_Salv 108 KKFRGVRRRP-WGRWAAEIRDPAR---HgARVWLGTYDTAEEAAMIYDAAAIQMRGA 160
                            59********.**********943...24*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.16E-30108166No hitNo description
SMARTSM003804.6E-35109173IPR001471AP2/ERF domain
PROSITE profilePS5103224.395109167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-30109167IPR001471AP2/ERF domain
PfamPF008471.5E-14109159IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22109167IPR016177DNA-binding domain
PRINTSPR003674.3E-10110121IPR001471AP2/ERF domain
PRINTSPR003674.3E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKSKITEPIK YTIHKTLTTK FCSPSPPSSK PCSRRETPRL VRISVTDCDA TDSSNDELEN  60
PYFRRVKKHV NEVRFEKENS LTMKSDAEEE EEKKKKRRPP PEMERREKKF RGVRRRPWGR  120
WAAEIRDPAR HGARVWLGTY DTAEEAAMIY DAAAIQMRGA NAVTNFTPPS TDTAAPAEDY  180
GDACEFVRFD FGDSKHDDAK LSCSRFESVD PKEEDLFSSD DFLSLGDEYL LNDDLDFRSQ  240
LNCDEIRLRE QVLDDDFSCV DIDLGDDFAW DLNELLAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22106166262ATERF1
3gcc_A1e-22106166262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19198EKKKKRRP
29297KKKKRR
39397KKKRR
49398KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093108.12e-63pathogenesis-related genes transcriptional activator PTI6
SwissprotQ9SUE32e-41CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A4D9BAW02e-80A0A4D9BAW0_SALSN; Uncharacterized protein
STRINGevm.model.supercontig_3.435e-50(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-23cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]