PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003637-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 999aa    MW: 111766 Da    PI: 4.7305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003637-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.11e-13853248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  SMil_00003637-RA_Salv  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                           78*****************************.************986 PP
2Myb_DNA-binding32.81.7e-1060103248
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  SMil_00003637-RA_Salv  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                            68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139214.8E-131070No hitNo description
CDDcd001676.58E-121053No hitNo description
SuperFamilySSF466897.55E-2133107IPR009057Homeodomain-like
CDDcd116591.69E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118311.8E-55406654IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGINLRHK KRKRRGIDYN AEIPFEKRPP PGFYDIADED RPTELVKFPT  240
TIEELEGERR VDKEARLRKQ DIARNKIAER QDAPSAILQA NKLNDPEAVR KRSRLNLPAP  300
QIPDHELEAI AKMGIASDLL GNEELTEGNA ATRALLASYA QTPRHGMTPG RTPQRTPAGK  360
QDAIMMEAEN QRRLTLSQTP LLGGDNPMLH PSDFSGVTPK KKDIATPNPL LTPSATPGGA  420
GLTPRIGMTP TRDVYAVGMT PKGASMRDEL HINEDLDMHD SAKLRQSDSK KELIFGLQNL  480
PQPKNDYQIV IQPLAEEDEE PDEKKIEEDM SDRIAREKAE EEARQQALLK KRSKVLQREL  540
PRPPVASLDL IRNTLMRADE DKSSVVPSTL VEQADELVRK ELLSLLEHDN IKYPLDEKAT  600
KEKKKGGKRA ANENSVSVPT IDEFEEDELK EADKFIEDEV QYLRVAMGHE NESIDGYVEA  660
HKTCLNDIMY FPTRRDGYGL ASVANHAEKL ASLQNEFENV KKKMDDETKK AQRHEQKIKV  720
LTNGYQMRAN KLWAQVEATF KQMDTAGTEL ECFQALKKQE TLSATYRISN LWEEVQKQKD  780
LERTLQKRYG DLMTELESAQ HLVNAYRLQA ERDYENAAKD NDTAMDAIDT SQNQSVGPDI  840
EAPEDKVAAN NNDAAMEGVD AAEDQPVASD VGTSKEEVVT KDTVEAEAEA DAAGEEVGVP  900
TAEPEADAAG EEVGVPTAEP EADAAGYEVV APTAEPGGIP NEENCTEMQN ADETRGPELD  960
PAHAQAESRS EDGNDASQEN ATSTTGDLQV ADEIAGEEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027983797Cell division cycle 5-like protein
5xjc_L0.027983797Cell division cycle 5-like protein
5yzg_L0.027983797Cell division cycle 5-like protein
5z56_L0.027983797Cell division cycle 5-like protein
5z57_L0.027983797Cell division cycle 5-like protein
5z58_L0.027983797Cell division cycle 5-like protein
6ff4_L0.027983797Cell division cycle 5-like protein
6ff7_L0.027983797Cell division cycle 5-like protein
6icz_L0.027983797Cell division cycle 5-like protein
6id0_L0.027983797Cell division cycle 5-like protein
6id1_L0.027983797Cell division cycle 5-like protein
6qdv_O0.027983797Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGINLRHKKRKRR
2199204KKRKRR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084262.10.0cell division cycle 5-like protein isoform X1
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A4D9B5R30.0A0A4D9B5R3_SALSN; Pre-mRNA-splicing factor CDC5/CEF1
STRINGMigut.F01544.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]