PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003632-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 342aa    MW: 38667.9 Da    PI: 4.9591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003632-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11176219654
                            HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                             ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  SMil_00003632-RA_Salv 176 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 219
                            589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15173241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9176219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-12176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-15177231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.17E-5177223No hitNo description
CDDcd048733.26E-4268309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
LCVFVFVPLS EREREMELYS KEHQGLLEEL LGLREMEQYN THNQEFNTSW NILEDVSIPT  60
STCFQDFYLP IDQTLHYSAP FGDGLSPPSD SSNTRINSQT LPYSTVAPQP QDYYCNAFSI  120
LHDEDAAVFG NGFRDLDIGA PLKAEPGLPA FDMGFSHQSE RKSKMKKLNG QPSKNLMAER  180
RRRKRLNDRL SMLRSVVPKI SKMDRTSILG DTIDYMKELL QSINNLQEEM NLGGNELELL  240
SIFKNAKPEE MLIRNSPKFE VERRESETRI GICCGGKPGL LLSTVTTLEA LGIDIQHCVI  300
SCFNDFAMQA SCSEDLKQRA VLDAEDIKQA LFRNAGYGGK CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178185ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574580.0KP257458.1 Salvia miltiorrhiza clone 25 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083994.11e-113transcription factor bHLH93-like
SwissprotQ9LSL12e-78BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0H3Y8T10.0A0A0H3Y8T1_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.N02832.1.p1e-110(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-75beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]