PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003526-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 175aa MW: 19721.4 Da PI: 9.9932 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd+ + av+ +G ++W+tIa+ g+ R +k+c+ rw +yl SMil_00003526-RA_Salv 17 RGPWTAEEDQEITAAVAVHGAKQWATIAASSGLSRGAKSCRVRWMNYL 64 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 70 | 111 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +E++l+++++k+lG++ W++Ia++++ gRt++++k++w +l SMil_00003526-RA_Salv 70 SDQEEDLIIRLHKLLGNR-WSLIAARLP-GRTDNEIKNYWKHHL 111 889***************.*********.***********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 10 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.672 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-29 | 14 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.85E-10 | 19 | 64 | No hit | No description |
SMART | SM00717 | 7.3E-11 | 67 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.528 | 69 | 115 | IPR017930 | Myb domain |
CDD | cd00167 | 3.31E-11 | 69 | 111 | No hit | No description |
Pfam | PF00249 | 7.6E-14 | 70 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-20 | 71 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MVASTSIKEK QRPSKKRGPW TAEEDQEITA AVAVHGAKQW ATIAASSGLS RGAKSCRVRW 60 MNYLRPNIMS DQEEDLIIRL HKLLGNRWSL IAARLPGRTD NEIKNYWKHH LSKKRLEKGV 120 VVAGISSDQH KGTSVSSKSV EISVSEAKID DFFDFSNEHP STLEWVTKFL EFGDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 13 | 114 | 3 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079754.1 | 2e-76 | transcription factor MYB114-like | ||||
Swissprot | Q9LTF7 | 5e-44 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A0K1ETI2 | 1e-74 | A0A0K1ETI2_TECGR; MYB transcription factor 3 | ||||
STRING | Migut.I01072.1.p | 8e-71 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 6e-46 | myb domain protein 82 |