PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003523-RA_Salv | ||||||||
Common Name | MYB34 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 27290.6 Da PI: 8.4705 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.3e-18 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk G g+W+ +ar g++R +k+c++rw +yl SMil_00003523-RA_Salv 17 KGPWTAEEDRLLIEYVKSNGEGRWNNVARLAGLKRNGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ SMil_00003523-RA_Salv 70 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.973 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.34E-30 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-16 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.26E-11 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 19.962 | 69 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 72 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.91E-10 | 74 | 115 | No hit | No description |
Gene3D | G3DSA:1.20.1000.10 | 9.7E-4 | 116 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
LMSWGMGWGA IDEGWRKGPW TAEEDRLLIE YVKSNGEGRW NNVARLAGLK RNGKSCRLRW 60 VNYLRPDLKR GQITPHEERI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKCN 120 SSSDSAEKTR ARLLRRQQFQ LQQQQQQQEQ QHEQDQIDMK KIITSLLDDH ENGVPGLAHP 180 TVSDEQGLLY SVISNCPTTA PEEEVVWDGL WNLEGLHGNY IAGKPNFQQN LDFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-28 | 17 | 119 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059388 | 0.0 | KF059388.1 Salvia miltiorrhiza MYB-related transcription factor (MYB34) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022849439.1 | 4e-98 | transcription factor WER-like | ||||
Refseq | XP_022849440.1 | 4e-98 | transcription factor WER-like | ||||
TrEMBL | A0A059PRE4 | 1e-169 | A0A059PRE4_SALMI; MYB-related transcription factor | ||||
STRING | cassava4.1_013947m | 3e-92 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-79 | myb domain protein 305 |
Publications ? help Back to Top | |||
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