PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003498-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family E2F/DP
Protein Properties Length: 447aa    MW: 48847.8 Da    PI: 7.9433
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003498-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.73.5e-27105187271
                E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                            ++++Lr++++k   ++ek e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  SMil_00003498-RA_Salv 105 SGRGLRQFSMK---VCEKLESkGRTTYNEVADELVAEfagpnnnlgspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 187
                            689********...****9999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-45101193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-35104187IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-21107188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.2E-25107187IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.32E-34192295IPR014889Transcription factor DP, C-terminal
SMARTSM011388.2E-52194356IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.28E-35194301No hitNo description
PfamPF087811.7E-35195323IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVNHSSANNH QGGRRGVGGG GATRSWGSTV SGQSMSTSGS GLASVIEAAA ATPATDSKFS  60
RLNNLDVQGD DAGVKDQVLI GESALTWHNN RKKKRGQSAV AGDKSGRGLR QFSMKVCEKL  120
ESKGRTTYNE VADELVAEFA GPNNNLGSPD QQQYDEKNIR RRVYDALNVL MAMDIISKDK  180
KEIQWKGLPH TSLSDIEELK TERAGHRSRV EKKGVYLMEL EEQYVGLENL IHRNEKLYGS  240
GNVPDRRVML PFILVQTRPH ATVEVEISED FQLVHFEYNS TPFELHDDNY VLKAMKLSEK  300
TQVEDAAART DGGERSRTPN VNQPRLVRAL RSSISGRLPT LPALPTPPPA TNDVGHPSLI  360
SLIAPHYSAQ QQPSSPSQPT ASSILPLPSF TGDSTHVAPS PTVPEWKPPS HALLFVRPLS  420
LSLSFLSHPL ELPPSSPTLD FQKSSQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-36102192593PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11119GGRRGVGGG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075421.11e-165transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-135DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G9FZK61e-160A0A2G9FZK6_9LAMI; E2F-like protein
STRINGMigut.J01656.1.p1e-154(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-137Transcription factor DP