PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00003473-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 545aa MW: 61656.6 Da PI: 8.5309

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003473-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.9	2.9e-17	57	151	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 kfY++YAk +GF rks+++ s ++g+i + + C++eg + + ++ k++r+r++ ++gC+ak+ + ++ g+++v ++ SMil_00003473-RA_Salv 57 KFYRKYAKACGFVSRKSTKSVS-NDGTIRIQYMLCNREGAAPNADELlladdyFPKKKRKRSSCKVGCEAKIIFQIMSYGRYYVRIFV 143 6***********99998887.88889999999**99998889999998899999************************ PP FAR1 83 leHnHela 90 + HnH+++ SMil_00003473-RA_Salv 144 EGHNHKMV 151 ***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-15	57	151	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.163	348	384	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MASLSSNMSE SMSASEVIEE SATDVLGESA NVWFPECDDS KKPFVGQIFN DLVKAVKFYR 60 KYAKACGFVS RKSTKSVSND GTIRIQYMLC NREGAAPNAD ELLLADDYFP KKKRKRSSCK 120 VGCEAKIIFQ IMSYGRYYVR IFVEGHNHKM VSAGTRHLLP SNRNIEPIHQ YFIHAGIKAN 180 FGPMRTFRMY VELVGGFDKA GCTSIDFKNY VRDLNVHIVD SDAHMLLDTL KNKKEDCEGF 240 QYFYDVDDEN QLSRLIWTDQ QSVNNYKNFG EAVSFDATYC TNRIDLADEI GVPPMCTIHA 300 IEKHASTLYT NSIFKEVQAE MKVAALSCIM SKMEGNKYVV DDNIDGLFTV THDTVTDYFR 360 CTCNLFTRKG YLCSHIFYVL RTLKVVEIPE KYIANRWCKS YMLSTFQATD KMTCPTRNLP 420 IGNDALFKVF SNCIGHVNGD EELRKQLLAD FIDVENKFKK LGKQNPMANS KAAMFNEFYG 480 ATPPDVPTVL PPAISKTKGS GAGGRRKSNM EKAITLSQKP LRNCKRCNTM AHHDSRNCPT 540 KAQPK

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MASLSSNMSE SMSASEVIEE SATDVLGESA NVWFPECDDS KKPFVGQIFN DLVKAVKFYR  60
KYAKACGFVS RKSTKSVSND GTIRIQYMLC NREGAAPNAD ELLLADDYFP KKKRKRSSCK  120
VGCEAKIIFQ IMSYGRYYVR IFVEGHNHKM VSAGTRHLLP SNRNIEPIHQ YFIHAGIKAN  180
FGPMRTFRMY VELVGGFDKA GCTSIDFKNY VRDLNVHIVD SDAHMLLDTL KNKKEDCEGF  240
QYFYDVDDEN QLSRLIWTDQ QSVNNYKNFG EAVSFDATYC TNRIDLADEI GVPPMCTIHA  300
IEKHASTLYT NSIFKEVQAE MKVAALSCIM SKMEGNKYVV DDNIDGLFTV THDTVTDYFR  360
CTCNLFTRKG YLCSHIFYVL RTLKVVEIPE KYIANRWCKS YMLSTFQATD KMTCPTRNLP  420
IGNDALFKVF SNCIGHVNGD EELRKQLLAD FIDVENKFKK LGKQNPMANS KAAMFNEFYG  480
ATPPDVPTVL PPAISKTKGS GAGGRRKSNM EKAITLSQKP LRNCKRCNTM AHHDSRNCPT  540
KAQPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	116	KKRKRS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16839	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-29	FAR1-related sequence 5