PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003459-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 241aa MW: 26213.7 Da PI: 9.8258 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.1e-40 | 36 | 94 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ SMil_00003459-RA_Salv 36 PENLRCPRCDSANTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKAT 94 57899***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 5.0E-33 | 38 | 93 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-24 | 39 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.413 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
DRSKLSTTTP CGGGGGGILD HASPSPSPPP SSAAAPENLR CPRCDSANTK FCYYNNYNLT 60 QPRHFCKTCR RYWTKGGALR NVPIGGGCRK NKATAIAAKS AAKLRTPPPP PQQSEMALSP 120 IPNPMIWASP QSSHFLSLIR GNPNHLAIKD ETSPNLALHR NQTQFVEAQH HGLQELYHRL 180 RLSPNFYPEI ANSSTILESA PVAVAAAADH MGFWGSNASW AADCRQLTVH ILKRQNPSYV 240 I |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM084363 | 2e-59 | AM084363.1 Hordeum vulgare subsp. vulgare partial dof15 gene for dof zinc finger protein 15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554970.1 | 7e-57 | dof zinc finger protein DOF1.1-like | ||||
TrEMBL | A0A4D9AF32 | 9e-65 | A0A4D9AF32_SALSN; Uncharacterized protein | ||||
TrEMBL | A0A4D9BVI9 | 7e-65 | A0A4D9BVI9_SALSN; Uncharacterized protein | ||||
STRING | cassava4.1_024126m | 2e-54 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.2 | 4e-32 | Dof family protein |