PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003437-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 652aa    MW: 72234 Da    PI: 4.8182
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003437-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-19503596292
                            EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ + +ed  ++r W++++++  ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ 
  SMil_00003437-RA_Salv 503 QKVLKQSDVGNLGRIVLPKKEAESHlpELETRDGISIAMEDiGTSRIWNMRYRFwpNNKSRMYLLE-NTGDFVRVNGLQEGDFIVIYS 589
                            79*************************99999*********7778*******99777777777777.********************3 PP

                            -SS.SEE.. CS
                     B3  85 dgr.sefel 92 
                              + +++++
  SMil_00003437-RA_Salv 590 --DtKCGKY 596
                            ..3366654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-26496598IPR015300DNA-binding pseudobarrel domain
CDDcd100156.49E-33500596No hitNo description
SuperFamilySSF1019361.8E-22501597IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.7E-18502601IPR003340B3 DNA binding domain
PROSITE profilePS5086310.292502604IPR003340B3 DNA binding domain
PfamPF023621.2E-15503596IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MVTVGAAEQD LHLKSEDNGV ANAANPSGFD PMEEEQHQHH HGVVWVDDRE QDSLLDVNEA  60
SIFYDDFPPL PDFPCMSSSS SSSSTQPVSK PIAGTSSSSS ATSAASWAVA EEVKMEASST  120
AAAAPDCMDV MENFGYMDLI DCNDLWDPSS VFQSENPQDM LEDQQAAAVA AAPAGEEEKD  180
GLSFLQGNSE LAMIFFEWLK QNKDYISAED MRSIKLKRST IESASKRLGS TKEGKKQLLK  240
LILEWVEQYQ LQKKARLPLP VPEPQSPFAF DDTLQIPADP NFMFNADPNP TTQHWMQDPT  300
PPPPPPPPPS FAPPMMPAYS GDPYMNHGVV NGIPYAEYPP SWAFPQFTPF PDNGSAAIIN  360
RQQQQQQSLY ANPYQMYDPN GERLAMRLGS SATKEARKKR MARQRRLYSH HHRHSTNSNQ  420
HQNQLNDPPD ADQGASPGDW VYWSPAGASS PTLQAPADAN SADRATMQPQ NCQRQAAAGG  480
GGASDRRQQQ GWKTEKNLKF LLQKVLKQSD VGNLGRIVLP KKEAESHLPE LETRDGISIA  540
MEDIGTSRIW NMRYRFWPNN KSRMYLLENT GDFVRVNGLQ EGDFIVIYSD TKCGKYVSSS  600
TTASSLSSPS RFPTECWHDT DDPRSESATG GWKVGGQETG EEKHTQHIIA CR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-364986041107B3 domain-containing transcription factor FUS3
6j9b_D4e-364986041107B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080160.10.0B3 domain-containing transcription factor ABI3 isoform X1
TrEMBLA0A2G9IAV30.0A0A2G9IAV3_9LAMI; Uncharacterized protein
STRINGMigut.D00511.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.16e-36B3 family protein