PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00003437-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 652aa MW: 72234 Da PI: 4.8182 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.5 | 1.4e-19 | 503 | 596 | 2 | 92 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 +kvl++sdv+++gr+vlpkk ae+h +++++ ++ + +ed ++r W++++++ ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ SMil_00003437-RA_Salv 503 QKVLKQSDVGNLGRIVLPKKEAESHlpELETRDGISIAMEDiGTSRIWNMRYRFwpNNKSRMYLLE-NTGDFVRVNGLQEGDFIVIYS 589 79*************************99999*********7778*******99777777777777.********************3 PP -SS.SEE.. CS B3 85 dgr.sefel 92 + +++++ SMil_00003437-RA_Salv 590 --DtKCGKY 596 ..3366654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-26 | 496 | 598 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 6.49E-33 | 500 | 596 | No hit | No description |
SuperFamily | SSF101936 | 1.8E-22 | 501 | 597 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.7E-18 | 502 | 601 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.292 | 502 | 604 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-15 | 503 | 596 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 652 aa Download sequence Send to blast |
MVTVGAAEQD LHLKSEDNGV ANAANPSGFD PMEEEQHQHH HGVVWVDDRE QDSLLDVNEA 60 SIFYDDFPPL PDFPCMSSSS SSSSTQPVSK PIAGTSSSSS ATSAASWAVA EEVKMEASST 120 AAAAPDCMDV MENFGYMDLI DCNDLWDPSS VFQSENPQDM LEDQQAAAVA AAPAGEEEKD 180 GLSFLQGNSE LAMIFFEWLK QNKDYISAED MRSIKLKRST IESASKRLGS TKEGKKQLLK 240 LILEWVEQYQ LQKKARLPLP VPEPQSPFAF DDTLQIPADP NFMFNADPNP TTQHWMQDPT 300 PPPPPPPPPS FAPPMMPAYS GDPYMNHGVV NGIPYAEYPP SWAFPQFTPF PDNGSAAIIN 360 RQQQQQQSLY ANPYQMYDPN GERLAMRLGS SATKEARKKR MARQRRLYSH HHRHSTNSNQ 420 HQNQLNDPPD ADQGASPGDW VYWSPAGASS PTLQAPADAN SADRATMQPQ NCQRQAAAGG 480 GGASDRRQQQ GWKTEKNLKF LLQKVLKQSD VGNLGRIVLP KKEAESHLPE LETRDGISIA 540 MEDIGTSRIW NMRYRFWPNN KSRMYLLENT GDFVRVNGLQ EGDFIVIYSD TKCGKYVSSS 600 TTASSLSSPS RFPTECWHDT DDPRSESATG GWKVGGQETG EEKHTQHIIA CR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 4e-36 | 498 | 604 | 1 | 107 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 4e-36 | 498 | 604 | 1 | 107 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080160.1 | 0.0 | B3 domain-containing transcription factor ABI3 isoform X1 | ||||
TrEMBL | A0A2G9IAV3 | 0.0 | A0A2G9IAV3_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00511.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4270 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26790.1 | 6e-36 | B3 family protein |