PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003435-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 246aa MW: 27127.5 Da PI: 8.8282 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.1 | 1.6e-31 | 45 | 100 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +v Y+eClkNhAa++Gg+++DGCgEfmps g+eg+ +alkCaAC CHRnFHRre++ SMil_00003435-RA_Salv 45 RVSYRECLKNHAANIGGNVTDGCGEFMPS-GDEGSLEALKCAACSCHRNFHRREHHG 100 799*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-21 | 46 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.7E-29 | 46 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.382 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.4E-29 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.38E-18 | 165 | 235 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-30 | 174 | 237 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.0E-30 | 178 | 234 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSLPGEDKEM RVQGYSLENP PDKSRGSDPY SGGSKHKPGS NNHPRVSYRE CLKNHAANIG 60 GNVTDGCGEF MPSGDEGSLE ALKCAACSCH RNFHRREHHG ESPATAAMVH PLQLPPPLPS 120 PSMSQHRAGT HWSPMVQPVK MAFGGAGSAG TDSSSEELNF NAFHSSAVAP PPPQFVAKKR 180 FRTKFTAEQK EKMLEFAEKL GWRIPREDDT EVQRFCAEVG VKRQVFKVWM HNNKTSSSSK 240 KIPQEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-27 | 179 | 236 | 18 | 75 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083674.1 | 1e-135 | zinc-finger homeodomain protein 5 | ||||
Swissprot | Q9M9S0 | 9e-62 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2G9HCI4 | 1e-116 | A0A2G9HCI4_9LAMI; Uncharacterized protein | ||||
STRING | Migut.C00746.1.p | 1e-111 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-59 | homeobox protein 31 |