PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003379-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HB-other
Protein Properties Length: 944aa    MW: 105495 Da    PI: 8.9398
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003379-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.41.8e-0670126157
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                            +r+R  ++++ ++ ++ +F ++  +s++e +e++++ g+t +qV+ +F  +R++ +k
  SMil_00003379-RA_Salv  70 KRPRDLLNPKAVKYMQLVFSMKDAISKRETREISAQFGVTVTQVRDFFAGQRTRVRK 126
                            799**************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.60467127IPR001356Homeobox domain
SMARTSM003890.006769131IPR001356Homeobox domain
SuperFamilySSF466893.68E-670131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-570133IPR009057Homeodomain-like
CDDcd000860.0010570126No hitNo description
Gene3DG3DSA:1.20.930.103.3E-7233326IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476761.33E-6234326IPR017923Transcription factor IIS, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
MELSKDTQLM EVAASQATTS YQILLDEQKD LFQNQIEKLQ QIVATQCKLT GVNPLSQEMA  60
ASALSIKIGK RPRDLLNPKA VKYMQLVFSM KDAISKRETR EISAQFGVTV TQVRDFFAGQ  120
RTRVRKFVRL SREKANTTAC DLMHDGITST SNLDMPAEPI PLATVAEPIP LVTVVPTSID  180
EGPSSSKRHE DLPGLADSEK HFVDNIFGLM RKEESFSGQV KLIRWILRIT NPSVLNWFLS  240
EGGLMILATW LSEAAKEEQT SVLSVILKLL DYLPVSKALP GHMSAILQSV NRLRFYRVTD  300
ISNRARSMLS KWSKRLGKNL SSKKSNGLKS ASDLQDEMLL KQSISEVMGN ESWDLKKENT  360
EDALRFMCEN PDSPRKLDTA QPLKMLTAPG DDSNKRRGVF PPQTRERRKV QLVEHPDQRV  420
AARSPQVARS MTATQSRPLS ADDIQKAKMR AHFMQNKYGK TITSDEKIKS ESEKRKSESE  480
SKLTTASPNA SLVTLVSKAN VQNECEEQTK VDDSLSELSN PHETSSKLEE PPWKKYKRIQ  540
IPWKMPPEVK IDETWSVGEG ANSKEVEVQK NRIRREREVV YRTIQEIPSN PREPWDREMD  600
CDDSLTPEIP IEQLPDVEPL EAPADDPNHS NETVAPASSE SIHEPDFELL AELLKNPELV  660
FALTSGQAGN LSSDETVKLL DRIKTNGVSS LANLAGNANN KVEVSLPSPT PTSDPVPNGA  720
KPDFSRNPFS RQQGLANGNA YEVSLQQGMV RSQIPATTML TPQPSAYAHK VVPPPASVQL  780
PEQWQAHTNP QMHHLNRHNS SNAQHFTSEM ANLNRARGAS PSAVWGDSLG PSRSATPPNS  840
SLRARQGFES NYHHGYGGGS MQPSSGSWGG RSGVADRHDR REYESWSPDN SPSRRHENVP  900
GRRHNETSLS LRNGYRHGKT TQQDFVQHSG YQDGGNKRWQ DRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079715.10.0homeobox protein LUMINIDEPENDENS
TrEMBLA0A4D8YFN50.0A0A4D8YFN5_SALSN; Uncharacterized protein
STRINGMigut.D00183.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52402123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-145HB-other family protein