PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003302-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 444aa    MW: 46523.7 Da    PI: 8.6064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003302-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-101741327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           +++C+++ rtG Ck+G++Ck++H++
  SMil_00003302-RA_Salv 17 QPICQYYIRTGMCKFGGSCKYHHPK 41
                           799********************96 PP
2zf-CCCH35.61.5e-116387327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           +++C+++ +tG+Ck+G +CkF+H++
  SMil_00003302-RA_Salv 63 EKECSYYVKTGQCKFGVTCKFHHPQ 87
                           689********************97 PP
3zf-CCCH35.22.1e-11230256127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+++ rtG Ck+G++Ck++H+p
  SMil_00003302-RA_Salv 230 PGQPECQYYIRTGDCKFGATCKYHHPP 256
                            5789*********************97 PP
4zf-CCCH36.58.1e-12320343427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            +lC+++a++G Ck+G++CkF H++
  SMil_00003302-RA_Salv 320 PLCSHYAQNGVCKFGPSCKFDHPM 343
                            8*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9431442IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-51441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-61742IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-61741IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-41940IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-56087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.766088IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-66188IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-96387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-46686IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5229256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338229257IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-8231256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5233256IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-7316343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587316344IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9320343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6320346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5321342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MGALRAGGGE YPERVGQPIC QYYIRTGMCK FGGSCKYHHP KQGVGSSAPV ALNFYGYPLR  60
LGEKECSYYV KTGQCKFGVT CKFHHPQPAG IPMPPPGPGS LSASAAVPTP AMYPTGPSPS  120
VQSSQQYGVI QGNWPVARPA MLQGSYVPGS YGHVILPPGV VPVPGWTPYA APVSHAASPS  180
NQPTIGATPI YGIPQLSPSA TAYTGPYLSI TSSAGLSSGS QKEQAFPERP GQPECQYYIR  240
TGDCKFGATC KYHHPPEWNA SKTNYVLSPM GLPLRPVSIH FSLERLLLLI NSNLHMVAPI  300
SVQLKPTVSY ESMVDLEGAP LCSHYAQNGV CKFGPSCKFD HPMRSLSYSP SASSLTDMPV  360
APYPVGSTIA TLAPSSSSSD LRPELLSGFS QMSSMSSSSA SVGSIFSKTG ALPLSYVQQS  420
GQGSVSSSGG SSAASHGGET HTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071464.10.0zinc finger CCCH domain-containing protein 34
RefseqXP_011071465.10.0zinc finger CCCH domain-containing protein 34
TrEMBLA0A4D8Z7M80.0A0A4D8Z7M8_SALSN; Uncharacterized protein
STRINGMigut.G00275.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-96C3H family protein