PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003301-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33674.8 Da PI: 6.0355 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.8e-17 | 54 | 102 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g SMil_00003301-RA_Salv 54 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSIKG 102 56******.**********965...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.7E-31 | 53 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.653 | 53 | 110 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.07E-27 | 53 | 109 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-27 | 54 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-7 | 54 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-20 | 54 | 111 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-10 | 56 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-7 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MSSQSHKPSH EKPFTLFEPI LTDTGFTLLQ RNTAAATQAG DRRGRKKQAE PGRFLGVRRR 60 PWGRYAAEIR DPTTKERHWL GTFDTAQEAA LAYDRAALSI KGTQARTNFI YSDQTTFHSL 120 FELQPFLQPP SSKTTKHHAT TKTAAAGRVP PQSGHDTCRS PDDDQASFFK TDTSSGYLDC 180 IVPNNYLNPS SSSSSSSSAT TTNSSKKQEA SLSSHNIQLL DSTEAAAAWS LDHTSAYQEF 240 DYGLWDSQQQ WELSSCELSA MINNPTNMEE NRGDFDQMMS NDAASCSYFF PSFGDSVDLG 300 QSLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-20 | 41 | 109 | 2 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727872 | 4e-33 | KJ727872.1 Zea mays clone pUT5965 AP2-EREBP transcription factor (EREB183) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090930.1 | 1e-113 | ethylene-responsive transcription factor ERF086 | ||||
TrEMBL | A0A4D8YZP3 | 1e-157 | A0A4D8YZP3_SALSN; EREBP-like factor | ||||
STRING | EOY06447 | 4e-82 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9307 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 9e-48 | ERF family protein |