PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003301-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 304aa    MW: 33674.8 Da    PI: 6.0355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003301-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1754102355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  SMil_00003301-RA_Salv  54 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSIKG 102
                            56******.**********965...5***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-3153116IPR001471AP2/ERF domain
PROSITE profilePS5103220.65353110IPR001471AP2/ERF domain
CDDcd000181.07E-2753109No hitNo description
Gene3DG3DSA:3.30.730.101.0E-2754110IPR001471AP2/ERF domain
PRINTSPR003671.0E-75465IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2054111IPR016177DNA-binding domain
PfamPF008471.2E-1056102IPR001471AP2/ERF domain
PRINTSPR003671.0E-77692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSSQSHKPSH EKPFTLFEPI LTDTGFTLLQ RNTAAATQAG DRRGRKKQAE PGRFLGVRRR  60
PWGRYAAEIR DPTTKERHWL GTFDTAQEAA LAYDRAALSI KGTQARTNFI YSDQTTFHSL  120
FELQPFLQPP SSKTTKHHAT TKTAAAGRVP PQSGHDTCRS PDDDQASFFK TDTSSGYLDC  180
IVPNNYLNPS SSSSSSSSAT TTNSSKKQEA SLSSHNIQLL DSTEAAAAWS LDHTSAYQEF  240
DYGLWDSQQQ WELSSCELSA MINNPTNMEE NRGDFDQMMS NDAASCSYFF PSFGDSVDLG  300
QSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2041109271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278724e-33KJ727872.1 Zea mays clone pUT5965 AP2-EREBP transcription factor (EREB183) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090930.11e-113ethylene-responsive transcription factor ERF086
TrEMBLA0A4D8YZP31e-157A0A4D8YZP3_SALSN; EREBP-like factor
STRINGEOY064474e-82(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.19e-48ERF family protein