PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003293-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 178aa    MW: 19012.4 Da    PI: 5.2621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003293-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-162069155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+G+r ++ +g+Wv+eIr p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  SMil_00003293-RA_Salv 20 PSYRGIR-CR-SGKWVSEIRKPRQ---TARIWLGTYPTPEMAAAAYDVAALALRG 69
                           579***9.55.6*********943...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.79E-152077No hitNo description
PfamPF008471.1E-102069IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-262177IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-182177IPR016177DNA-binding domain
PROSITE profilePS5103219.8362177IPR001471AP2/ERF domain
SMARTSM003806.8E-272183IPR001471AP2/ERF domain
PRINTSPR003672.4E-62233IPR001471AP2/ERF domain
PRINTSPR003672.4E-65979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAAEDGSLPP PASPRSGRHP SYRGIRCRSG KWVSEIRKPR QTARIWLGTY PTPEMAAAAY  60
DVAALALRGP EAMINFPGLA PTYPMPASFS DDDIRAAAAA SASAIAPRNA GPGPAGEASW  120
SSSQAHDFVD EEALFGMPKL LDDMAHGMLV SPPRMKPAAE DAESPEDYSK NDSLWKYP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076239.21e-66LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF025
SwissprotQ9FJ904e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A4D9ARQ72e-77A0A4D9ARQ7_SALSN; Uncharacterized protein
STRINGMigut.F00381.1.p1e-56(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-42ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]