PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003232-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YC | ||||||||
Protein Properties | Length: 225aa MW: 24553.7 Da PI: 4.7097 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.1 | 4e-56 | 41 | 145 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+tr SMil_00003232-RA_Salv 41 QLQVFWNYQkqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITR 128 89****999889**************************************************************************** PP NF-YC 86 tdifdflvdivprdelk 102 tdifdflvdivprde+k SMil_00003232-RA_Salv 129 TDIFDFLVDIVPRDEIK 145 **************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-34 | 16 | 135 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-20 | 63 | 126 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.3E-37 | 64 | 141 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MENNPQQSAA PPYPPGAAAA AAAGYPSQPP YQNLLQQQQH QLQVFWNYQK QEIEQVNDFK 60 NHQLPLARIK KIMKADEDVR MISAEAPILF AKACELFILE LTIRSWLHAE ENKRRTLQKN 120 DIAAAITRTD IFDFLVDIVP RDEIKDEAAA LGGIVGPPAG VTGVPYYYPP MGQPMMGRPA 180 VDPGVYVQPP PPPSQAWQSV WQTGAEDGSY GSGGGTSSGQ GNLDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-55 | 49 | 141 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022852290.1 | 1e-116 | nuclear transcription factor Y subunit C-1-like isoform X1 | ||||
Swissprot | Q9SMP0 | 2e-96 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2G9G635 | 1e-111 | A0A2G9G635_9LAMI; CCAAT-binding factor, subunit C (HAP5) | ||||
STRING | Solyc03g110860.2.1 | 1e-110 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4087 | 21 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 3e-80 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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