PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003183-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 337aa MW: 35816.8 Da PI: 9.5131 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.8 | 5.5e-39 | 74 | 133 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e++lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ SMil_00003183-RA_Salv 74 ETSLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 133 6789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-34 | 57 | 126 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-32 | 76 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 79 | 115 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MVFSSIPAYL DPSNWNQQQN HQIIGSSSAN PLLPPPPHPG GPPPPPPPQP HGGGGIRPGS 60 MAERARMANI PMPETSLKCP RCESTNTKFC YFNNYSLSQP RHFCKTCRRY WTRGGALRNV 120 PVGGGCRRNK RSKSSNSKSP ASSDRQANNN PSSTSTVSTN SNSAAANMLG LTPPLPPLRF 180 MSPLGQFTDN FTADMGLNYS AIAASTVGTS DMNFHGAGSL LGGSGSGGVA SLLSSEGGGI 240 EPWRLQQVQQ FPFLDASSQG FYQFHGGEAG FLGGGEARPK LSSPMMSQRP PVKMEDNNAE 300 NNLTRQILGG NEQWNAPTTA NWTDLSSFSS SSTSNPL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493581 | 4e-36 | AB493581.1 Arabidopsis thaliana At2g37590 mRNA for hypothetical protein, partial cds, clone: RAAt2g37590. | |||
GenBank | AC004684 | 4e-36 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. | |||
GenBank | BT030014 | 4e-36 | BT030014.1 Arabidopsis thaliana At2g37590 mRNA, complete cds. | |||
GenBank | CP002685 | 4e-36 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095199.1 | 1e-134 | dof zinc finger protein DOF5.1 | ||||
TrEMBL | A0A4D9BAY2 | 1e-132 | A0A4D9BAY2_SALSN; Uncharacterized protein | ||||
STRING | EOY07547 | 1e-100 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1917 | 24 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 2e-46 | DNA binding with one finger 2.4 |