PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003170-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 324aa    MW: 36265.4 Da    PI: 6.8663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003170-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18177226255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr++  +g+WvAeIr+p   + r +r++lg+f t  eAa+a++ a+++l+g
  SMil_00003170-RA_Salv 177 TYRGVRQRT-WGKWVAEIREP---N-RgARVWLGTFNTSLEAAQAYDDAARRLYG 226
                            69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.87E-27176235No hitNo description
PfamPF008473.9E-13177226IPR001471AP2/ERF domain
SMARTSM003801.7E-31177240IPR001471AP2/ERF domain
PROSITE profilePS5103221.351177234IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-19177234IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-29177234IPR001471AP2/ERF domain
PRINTSPR003671.0E-9178189IPR001471AP2/ERF domain
PRINTSPR003671.0E-9200216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDPHNPNYYD LNWCPNLSDG YHPDLSGCNL GDAPPSDEEM PSAAQSAAKP KKGSRRKEIA  60
HKIRHDRQAP AAEEDDGGKI VRQTYTLELT DLIVYLRSSP PPQPFKFRHH TLQPLYNFDD  120
EPLTFPATTD SLSAAAKRRM PPQPPTHTAP EKRSAAVRRS RKGCMRGKGG PENALCTYRG  180
VRQRTWGKWV AEIREPNRGA RVWLGTFNTS LEAAQAYDDA ARRLYGAGAK LNLQEPDSGG  240
GRNMQTPAAQ PAVSPSCTDS VVPDYYDNYY RSESSVLDEA RSMWDIPAAP TLLDEKQSLN  300
WPEFPPESFS KCDFMDDTRV PWTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-14178233359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-14178233662ATERF1
3gcc_A1e-14178233662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084760.12e-65ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A4D8ZPP84e-92A0A4D8ZPP8_SALSN; Uncharacterized protein
STRINGMigut.F01818.1.p5e-60(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.19e-42ERF family protein