PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003169-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 304aa    MW: 33847.6 Da    PI: 5.7443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003169-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18157206255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr++  +g+WvAeIr+p   + r +r++lg+f t  eAa+a++ a+++l+g
  SMil_00003169-RA_Salv 157 TYRGVRQRT-WGKWVAEIREP---N-RgARVWLGTFNTSLEAAQAYDDAARRLYG 206
                            69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.49E-27156215No hitNo description
PfamPF008473.5E-13157206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-29157214IPR001471AP2/ERF domain
PROSITE profilePS5103221.351157214IPR001471AP2/ERF domain
SMARTSM003801.7E-31157220IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-19157214IPR016177DNA-binding domain
PRINTSPR003679.1E-10158169IPR001471AP2/ERF domain
PRINTSPR003679.1E-10180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDPHNPNYYD LNWCPNLSDG YHPDLSGCNL GDAPPSDEEM PSAAQSAAKP KKGSRRKEIA  60
HKIRHDRQAP AAEEDDGGKI VRQTYTLELT DLIPLYNFDD EPLTFPATTD SLSAAAKRRM  120
PPQPPTHTAP EKRSAAVRRS RKGCMRGKGG PENALCTYRG VRQRTWGKWV AEIREPNRGA  180
RVWLGTFNTS LEAAQAYDDA ARRLYGAGAK LNLQEPDSGG GRNMQTPAAQ PAVSPSCTDS  240
VVPDYYDNYY RSESSVLDEA RSMWDIPAAP TLLDEKQSLN WPEFPPESFS KCDFMDDTRV  300
PWTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-15158213662ATERF1
3gcc_A8e-15158213662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084760.11e-65ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A4D8ZPP83e-92A0A4D8ZPP8_SALSN; Uncharacterized protein
STRINGMigut.F01818.1.p3e-60(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.15e-42ERF family protein