PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003169-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33847.6 Da PI: 5.7443 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.2e-18 | 157 | 206 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r++lg+f t eAa+a++ a+++l+g SMil_00003169-RA_Salv 157 TYRGVRQRT-WGKWVAEIREP---N-RgARVWLGTFNTSLEAAQAYDDAARRLYG 206 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.49E-27 | 156 | 215 | No hit | No description |
Pfam | PF00847 | 3.5E-13 | 157 | 206 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-29 | 157 | 214 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.351 | 157 | 214 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-31 | 157 | 220 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-19 | 157 | 214 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.1E-10 | 158 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-10 | 180 | 196 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MDPHNPNYYD LNWCPNLSDG YHPDLSGCNL GDAPPSDEEM PSAAQSAAKP KKGSRRKEIA 60 HKIRHDRQAP AAEEDDGGKI VRQTYTLELT DLIPLYNFDD EPLTFPATTD SLSAAAKRRM 120 PPQPPTHTAP EKRSAAVRRS RKGCMRGKGG PENALCTYRG VRQRTWGKWV AEIREPNRGA 180 RVWLGTFNTS LEAAQAYDDA ARRLYGAGAK LNLQEPDSGG GRNMQTPAAQ PAVSPSCTDS 240 VVPDYYDNYY RSESSVLDEA RSMWDIPAAP TLLDEKQSLN WPEFPPESFS KCDFMDDTRV 300 PWTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-15 | 158 | 213 | 6 | 62 | ATERF1 |
3gcc_A | 8e-15 | 158 | 213 | 6 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084760.1 | 1e-65 | ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | A0A4D8ZPP8 | 3e-92 | A0A4D8ZPP8_SALSN; Uncharacterized protein | ||||
STRING | Migut.F01818.1.p | 3e-60 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 5e-42 | ERF family protein |