PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003108-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21156.8 Da PI: 10.4081 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3e-20 | 62 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +grW AeIrd r r++lg+f+tae+Aa+a++aa+++l+g SMil_00003108-RA_Salv 62 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDAAARRLRG 111 69*******.**********32....25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.83E-14 | 61 | 118 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.7E-30 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-32 | 62 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.392 | 62 | 119 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.0E-14 | 62 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 62 | 120 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-10 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MLRNDSLFPK VEKEKAEMLH LYFRQNPPAL EGIAAVVGER VLFGAADETG EKPVVDSAVQ 60 KSYRGVRKRP WGRWSAEIRD RIGRCRHWLG TFDTAEDAAR AYDAAARRLR GSKARTNFHI 120 PSVLPPPSSS SSNSSSSERR KRKRVSGGGT ARKCSVVTSA ANLFGRDPAD DGGGRAVSLE 180 LDLKIDDGGL VEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-17 | 61 | 120 | 4 | 64 | ATERF1 |
3gcc_A | 3e-17 | 61 | 120 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 143 | RRKRKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670238.1 | 1e-51 | PREDICTED: ethylene-responsive transcription factor ERF084-like | ||||
Refseq | XP_017609636.1 | 2e-51 | PREDICTED: ethylene-responsive transcription factor ERF084-like | ||||
Refseq | XP_017978247.1 | 2e-51 | PREDICTED: ethylene-responsive transcription factor ERF084 | ||||
TrEMBL | A0A4D8Z460 | 5e-65 | A0A4D8Z460_SALSN; EREBP-like factor | ||||
STRING | EOY25976 | 8e-51 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11552 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 5e-24 | ERF family protein |