PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003011-RA_Salv
Common NameMYB22
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 206aa    MW: 23748.6 Da    PI: 5.6594
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003011-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l++ ++  G g+W++ +++ g+ R++k+c++rw +yl
  SMil_00003011-RA_Salv 14 KGPWTAEEDLILINFINHNGHGNWRALPKRAGLLRCGKSCRLRWMNYL 61
                           79******************************99************97 PP
2Myb_DNA-binding491.4e-1567112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+++ eE+ ++++++++lG++ W+ Ia++++ gRt++++k+ w+++l
  SMil_00003011-RA_Salv  67 RGNFSREEEAIIINLHQELGNR-WSVIASRLP-GRTDNEIKNIWHTHL 112
                            89********************.*********.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.37961IPR017930Myb domain
SuperFamilySSF466893.03E-3010108IPR009057Homeodomain-like
SMARTSM007171.6E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001672.42E-101661No hitNo description
PROSITE profilePS5129424.57962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2765116IPR009057Homeodomain-like
SMARTSM007171.7E-1466114IPR001005SANT/Myb domain
PfamPF002493.4E-1467112IPR001005SANT/Myb domain
CDDcd001672.27E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTAE EDLILINFIN HNGHGNWRAL PKRAGLLRCG KSCRLRWMNY  60
LRPDIKRGNF SREEEAIIIN LHQELGNRWS VIASRLPGRT DNEIKNIWHT HLKKRLCKRS  120
RAEPEARNES TSDEDATNSP MHSFSEVSSE NPPEMDDSFW SEVLSGDDFV TDSPLRLSES  180
VNEDGGMDFW YNLFNRADDI LDLPDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593760.0KF059376.1 Salvia miltiorrhiza MYB-related transcription factor (MYB22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080041.13e-90transcription factor MYB14
SwissprotQ9SJX84e-74MYB14_ARATH; Transcription factor MYB14
TrEMBLW8CJZ81e-150W8CJZ8_SALMI; MYB transcription factor
STRINGGorai.001G177100.14e-81(Gossypium raimondii)
STRINGXP_004296369.13e-81(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-76myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]