PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002986-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 220aa    MW: 24960 Da    PI: 8.7936
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002986-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.42.4e-3391081100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            aCa+Ck++r+kC+++C+lap fp e++++f++vhk+FG+sn++k++++l+ee+r+ a++slv+eA  r++dPv G +g ++++ ++l+
  SMil_00002986-RA_Salv   9 ACASCKHQRKKCTEKCTLAPFFPVERTREFQAVHKVFGVSNITKIITSLREEDRKVAVDSLVWEALGRQKDPVLGPFGDYRRVCEELR 96 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                              k++ ++ +++
  SMil_00002986-RA_Salv  97 LYKSQYQHFHHQ 108
                            ***999988886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.6788109IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-319104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MQRANTMSAC ASCKHQRKKC TEKCTLAPFF PVERTREFQA VHKVFGVSNI TKIITSLREE  60
DRKVAVDSLV WEALGRQKDP VLGPFGDYRR VCEELRLYKS QYQHFHHQVP NQGSIVYKAT  120
AAQALMGWNN SNKVVNANNN NTNNNFIGNG NSVVDFCTYG YSPNHHIHQD SEKQRVEREN  180
GAVIPQQHLP NAFGQQFILA GQYNPLDSKS MESTLWEGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-208861088LOB family transfactor Ramosa2.1
5ly0_B6e-208861088LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098374.11e-107LOB domain-containing protein 2
SwissprotQ9LNB92e-45LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A4D8XQK51e-140A0A4D8XQK5_SALSN; Uncharacterized protein
STRINGMigut.H02160.1.p4e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-46LOB domain-containing protein 2