PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00002986-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 24960 Da PI: 8.7936 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 106.4 | 2.4e-33 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCa+Ck++r+kC+++C+lap fp e++++f++vhk+FG+sn++k++++l+ee+r+ a++slv+eA r++dPv G +g ++++ ++l+ SMil_00002986-RA_Salv 9 ACASCKHQRKKCTEKCTLAPFFPVERTREFQAVHKVFGVSNITKIITSLREEDRKVAVDSLVWEALGRQKDPVLGPFGDYRRVCEELR 96 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 k++ ++ +++ SMil_00002986-RA_Salv 97 LYKSQYQHFHHQ 108 ***999988886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.678 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-31 | 9 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MQRANTMSAC ASCKHQRKKC TEKCTLAPFF PVERTREFQA VHKVFGVSNI TKIITSLREE 60 DRKVAVDSLV WEALGRQKDP VLGPFGDYRR VCEELRLYKS QYQHFHHQVP NQGSIVYKAT 120 AAQALMGWNN SNKVVNANNN NTNNNFIGNG NSVVDFCTYG YSPNHHIHQD SEKQRVEREN 180 GAVIPQQHLP NAFGQQFILA GQYNPLDSKS MESTLWEGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-20 | 8 | 86 | 10 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-20 | 8 | 86 | 10 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098374.1 | 1e-107 | LOB domain-containing protein 2 | ||||
Swissprot | Q9LNB9 | 2e-45 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | A0A4D8XQK5 | 1e-140 | A0A4D8XQK5_SALSN; Uncharacterized protein | ||||
STRING | Migut.H02160.1.p | 4e-83 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10177 | 18 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-46 | LOB domain-containing protein 2 |