PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002860-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 384aa    MW: 43313.3 Da    PI: 5.249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002860-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.4e-11328379146
                            TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT...TTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg...kgRtlkqcksrwqk 46 
                            r+ WTteE+e l  av+++ ++    W++I ++      +Rt+ ++k++w +
  SMil_00002860-RA_Salv 328 RLMWTTEEEEALTAAVNRYSNEakiPWSKILEESKsfdVTRTPADLKDKWKN 379
                            678***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.35E-9864IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-91163IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002497.5E-71459IPR001965Zinc finger, PHD-type
PROSITE patternPS0135901558IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.3E-8323381IPR009057Homeodomain-like
PROSITE profilePS5129411.843323384IPR017930Myb domain
SuperFamilySSF466895.46E-9326381IPR009057Homeodomain-like
SMARTSM007178.6E-6327383IPR001005SANT/Myb domain
CDDcd116607.61E-10330379No hitNo description
PfamPF002491.1E-7330379IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
LVFLWKMDWS ENNWCIKCDK GGNVLLCSEN GCPLAVHEGC LGCPARTDDA GRFYCPYCLY  60
KQAVAESRKA REYALLRKKA LLIFMDGSEK DTGENKACED NGHDQSKTSG YVNDASCDGG  120
KSKSNNDGII DQPFPLGEEE KICIAEKDYD TTAGSKGEDH SLMMNVENGN RTVEEKQTQK  180
DECEPSVEEK NVQEEEREAS VEEVNVEEEE HEASVEKEKI QEEDCETSSD STNQDPSLTV  240
PARPKRGSKR SKPVDKESEA VPVQSKLLKQ HDKKQASPAV TPTRRSARRS SLATETGKVV  300
KEKFPSPRSV RKPDKPSENL FSKVKRRRLM WTTEEEEALT AAVNRYSNEA KIPWSKILEE  360
SKSFDVTRTP ADLKDKWKNK MSWK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324328KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082890.13e-88telomeric repeat-binding factor 1-like
RefseqXP_011082891.13e-88telomeric repeat-binding factor 1-like
RefseqXP_011082892.13e-88telomeric repeat-binding factor 1-like
RefseqXP_011082893.13e-88telomeric repeat-binding factor 1-like
RefseqXP_020550641.13e-88telomeric repeat-binding factor 1-like
RefseqXP_020550642.13e-88telomeric repeat-binding factor 1-like
TrEMBLA0A4D8ZU871e-137A0A4D8ZU87_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862910