PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002802-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 1633aa MW: 178483 Da PI: 6.6445

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002802-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	4.9e-08	1013	1053	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+ eE +++av +G++ + +++++ +++ +qck ++ SMil_00002802-RA_Salv 1013 DWSDEEKSVFIQAVSSYGKD-FGMVSQCVR-TKSTNQCKVFFS 1053 5***************99.*****.******8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.39E-13	780	840	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-4	787	837	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.31	792	843	IPR017884	SANT domain
SMART	SM00717	3.3E-8	793	841	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	10.003	1009	1060	IPR017884	SANT domain
SuperFamily	SSF46689	3.12E-10	1009	1060	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-6	1010	1058	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-4	1012	1054	IPR009057	Homeodomain-like
Pfam	PF00249	3.6E-6	1013	1053	IPR001005	SANT/Myb domain
CDD	cd00167	3.12E-5	1014	1052	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1633 aa Download sequence Send to blast
MPPEPLPWDR RDFRKHDRSA SNARAVAGGL GRGGPPKWRD QQQQQRHHRA PPPYHPQQRW 60 YSDFRSPGQS KQGGWPMYSG DAGQGFMPFG SRCDRNLEDE GCQPFGSRGN GRHFRTDRGS 120 FTLKDWKGPS WEAAAVHNST GETITEVNKL RSIENTQPCH NRSSRSDCAS HAPLGSISLS 180 DQSQTESLSR EKNDNTTDET TGKGEESEKE NCLEPVEWKP LKWSRVGSLS SRSSCTSHPT 240 SSKSPGRDSI EVLLEVKPKN VALDKSLSVD VSCVSSNAPA QSEETGSRKK PRLGWGEGLA 300 KYEKKKVEGP EDGTTKSEPS LSAISTESPL SQSVNLLEKS PRIESLLECA SPATPSSVAC 360 SYSPGVKLIL FVNEFILIYF HETGVLEEKP VQDANLEFDA TNVSCSPSIA SQSHYGGSPI 420 NLQNLELESI ANLSSLINEL LQSNDACSAE NGDTQRMSMN KLLVWKVDVL KALEMTESEI 480 ESLEIELKSS IAKPRICCFH PAGPRSLAGE QQSRPCEVLD TASRYGVGHV LSKDDDIDIP 540 GSATSKFVDV LPAIFPSEKA EFSKGSRNLD VDKSCNLDKK FLKNVFSSSE SHGYVNSHVL 600 IGNTSHKDCN VDNIWGSILS SNRDVASRAL EQLNKLLPEQ CGFDGSVESI ISSLPRISAV 660 VKDRFLKRKQ FIQFKEKVLA LKFKVFQHFW KEGRVVSIRT LQGKTRKKFD PSRNSQKRNR 720 SRVSSYAGGC QTVPADEVIN FVNNLLSQLA FKPYRNTLKM PALILDKHVK MSRFISNNGL 780 VEDPCTVEKE RSIMNPWAAE ETEIFIEKLA AFGKDFMKIA SFLDHKTVAD CIEFYYKNHK 840 SKWFVEARKN SGFIKQRKSQ TTTYLVGSGK RRNREFNAAS LDMLGAASVI AANIGNGMDV 900 RQKCISRSSF GASSSCGGPR AADHLLKGSD STNMENNERE TEAADVLASI CGSLSSETTS 960 SSITSSIDLG DGYQDPSCPR ITLCIKRPLT PEVTQDTDGE CSDESCGQMN PTDWSDEEKS 1020 VFIQAVSSYG KDFGMVSQCV RTKSTNQCKV FFSKARKCLG LDLVQPGPGA ASDDVDGGGS 1080 DIEDDCNMGT YSGIDNNSSE FKMKENSPPP RKNSNHESEI VDTAPDFRIF KGNNGLGPLD 1140 STTNELVLEN SSILGGCGDD KPVTDVQDPQ TAAVASNMES EQEIKEEVPD WSNEVGKGIL 1200 VKASNGHCAE EKQCQVPVLP EDNLSIRDAD SIDVNDTRCG ISWKKFEPQL IGNVSHATVD 1260 AHSSTQTNQK SDVPKEADVG TCTAEKSCVS SLLQNGRLAS VASSTIFSVP IKYKKTSNNT 1320 PLLPVEASGN DGTHLPSYSL SKSTGSSQIL QGYPLSLQTM KGTNGDVSSA SPNAPRRGEN 1380 LNSDWRTDFS LQKCNEARQS NASFRPLERV RDRGTPPSCC SSAGDNLPRN GDVKLFGKIL 1440 SSSQQNPVEQ ADDNSSSPNH RTKSLNLIVS SEQKDSAQSK FDYNSYAPPE KTAVRRFALW 1500 DGSRIQTTLI PPIPDSARLL AKYPSAFSNF ALPSLCEPVD VAPVFQSREM SSSIGVKQLQ 1560 DDTLAEMQRR SASNAASGTS GVDIGGRGRM VFGGQYHSLT DPVAAIKMHY ARMQGGNGVD 1620 GNDRWISSRD VGR

Sequence ? help Back to Top

Protein Sequence Length: 1633 aa Download sequence Send to blast

MPPEPLPWDR RDFRKHDRSA SNARAVAGGL GRGGPPKWRD QQQQQRHHRA PPPYHPQQRW  60
YSDFRSPGQS KQGGWPMYSG DAGQGFMPFG SRCDRNLEDE GCQPFGSRGN GRHFRTDRGS  120
FTLKDWKGPS WEAAAVHNST GETITEVNKL RSIENTQPCH NRSSRSDCAS HAPLGSISLS  180
DQSQTESLSR EKNDNTTDET TGKGEESEKE NCLEPVEWKP LKWSRVGSLS SRSSCTSHPT  240
SSKSPGRDSI EVLLEVKPKN VALDKSLSVD VSCVSSNAPA QSEETGSRKK PRLGWGEGLA  300
KYEKKKVEGP EDGTTKSEPS LSAISTESPL SQSVNLLEKS PRIESLLECA SPATPSSVAC  360
SYSPGVKLIL FVNEFILIYF HETGVLEEKP VQDANLEFDA TNVSCSPSIA SQSHYGGSPI  420
NLQNLELESI ANLSSLINEL LQSNDACSAE NGDTQRMSMN KLLVWKVDVL KALEMTESEI  480
ESLEIELKSS IAKPRICCFH PAGPRSLAGE QQSRPCEVLD TASRYGVGHV LSKDDDIDIP  540
GSATSKFVDV LPAIFPSEKA EFSKGSRNLD VDKSCNLDKK FLKNVFSSSE SHGYVNSHVL  600
IGNTSHKDCN VDNIWGSILS SNRDVASRAL EQLNKLLPEQ CGFDGSVESI ISSLPRISAV  660
VKDRFLKRKQ FIQFKEKVLA LKFKVFQHFW KEGRVVSIRT LQGKTRKKFD PSRNSQKRNR  720
SRVSSYAGGC QTVPADEVIN FVNNLLSQLA FKPYRNTLKM PALILDKHVK MSRFISNNGL  780
VEDPCTVEKE RSIMNPWAAE ETEIFIEKLA AFGKDFMKIA SFLDHKTVAD CIEFYYKNHK  840
SKWFVEARKN SGFIKQRKSQ TTTYLVGSGK RRNREFNAAS LDMLGAASVI AANIGNGMDV  900
RQKCISRSSF GASSSCGGPR AADHLLKGSD STNMENNERE TEAADVLASI CGSLSSETTS  960
SSITSSIDLG DGYQDPSCPR ITLCIKRPLT PEVTQDTDGE CSDESCGQMN PTDWSDEEKS  1020
VFIQAVSSYG KDFGMVSQCV RTKSTNQCKV FFSKARKCLG LDLVQPGPGA ASDDVDGGGS  1080
DIEDDCNMGT YSGIDNNSSE FKMKENSPPP RKNSNHESEI VDTAPDFRIF KGNNGLGPLD  1140
STTNELVLEN SSILGGCGDD KPVTDVQDPQ TAAVASNMES EQEIKEEVPD WSNEVGKGIL  1200
VKASNGHCAE EKQCQVPVLP EDNLSIRDAD SIDVNDTRCG ISWKKFEPQL IGNVSHATVD  1260
AHSSTQTNQK SDVPKEADVG TCTAEKSCVS SLLQNGRLAS VASSTIFSVP IKYKKTSNNT  1320
PLLPVEASGN DGTHLPSYSL SKSTGSSQIL QGYPLSLQTM KGTNGDVSSA SPNAPRRGEN  1380
LNSDWRTDFS LQKCNEARQS NASFRPLERV RDRGTPPSCC SSAGDNLPRN GDVKLFGKIL  1440
SSSQQNPVEQ ADDNSSSPNH RTKSLNLIVS SEQKDSAQSK FDYNSYAPPE KTAVRRFALW  1500
DGSRIQTTLI PPIPDSARLL AKYPSAFSNF ALPSLCEPVD VAPVFQSREM SSSIGVKQLQ  1560
DDTLAEMQRR SASNAASGTS GVDIGGRGRM VFGGQYHSLT DPVAAIKMHY ARMQGGNGVD  1620
GNDRWISSRD VGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-16	755	842	4	91	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-16	755	842	4	91	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	716	721	KRNRSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548929.1	0.0	uncharacterized protein LOC105161106
TrEMBL	A0A4D9BK67	0.0	A0A4D9BK67_SALSN; Uncharacterized protein
STRING	Migut.F01767.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5904	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-107	MYB family protein