PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002787-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 523aa    MW: 57014.9 Da    PI: 8.7126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002787-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.31.9e-34243299259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnh+
  SMil_00002787-RA_Salv 243 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSL-DGQITEIIYKGQHNHP 299
                            8****************************************.***************8 PP
2WRKY107.18.6e-34411469159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+a+dpk+v++tYeg+Hnh+
  SMil_00002787-RA_Salv 411 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTAGCNVRKHVERAASDPKAVITTYEGKHNHD 469
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.214237301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-30237301IPR003657WRKY domain
SuperFamilySSF1182909.55E-27240301IPR003657WRKY domain
SMARTSM007742.5E-38242300IPR003657WRKY domain
PfamPF031061.4E-26243299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-37396471IPR003657WRKY domain
SuperFamilySSF1182909.29E-30403471IPR003657WRKY domain
PROSITE profilePS5081138.813406471IPR003657WRKY domain
SMARTSM007741.7E-39411470IPR003657WRKY domain
PfamPF031063.1E-26412469IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
LQNDDFEKLE TQKSKGFKTP KKQSKVKVRL NPMAGNKPPP SSSSSKPPPS ITLPPRTSIE  60
SLFTGGAGAS PGPMSLVSSF FAENDPDNDC RSFSQLLAGA VQSTADEFRF QQNRPAGLAV  120
SHPPGAGTFT VPPGLSPATL LDSPDLFCSS QGHFGLSHHQ ILAQISGQAQ AQAQAQMQFQ  180
YSSFPSAPAS SISHMQPIPS NASFQQHIPP PLPDTKNIKE SSDFSQSDQK FQPANFAVDK  240
PTDDGYNWRK YGQKQVKGSE FPRSYYKCTH PSCPVKKKVE RSLDGQITEI IYKGQHNHPQ  300
PSKRPKDSGG SNGTMNPQRS SEFGGDRLSK PEEGGAKDQG SSQLTPEQVS GSSDSEEVAG  360
GETRVDDGHE DEPESKRRIV EVQNPEQASS SHRTVTEPRI IVQTTSEVDL LDDGYRWRKY  420
GQKVVKGNPY PRSYYKCTTA GCNVRKHVER AASDPKAVIT TYEGKHNHDV PAAKNSSHGN  480
ANAATQFRPQ NPVANRPAAS RGIEYGNEQQ SVALLRFKEE QIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-42243472878Probable WRKY transcription factor 4
2lex_A1e-42243472878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231770.0KM823177.1 Salvia miltiorrhiza WRKY protein (WRKY54) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070970.10.0probable WRKY transcription factor 3 isoform X2
SwissprotQ9ZQ701e-162WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0D5YA370.0A0A0D5YA37_SALMI; WRKY protein
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-149WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]