PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002781-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92776.2 Da    PI: 6.8953
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002781-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-182381357
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  SMil_00002781-RA_Salv 23 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
                           5679*****************************************************97 PP
2START176.61.5e-551813892205
                            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS
                  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 
                            +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++ 
  SMil_00002781-RA_Salv 181 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWLRDCRAVDVLNVLPTAn 267
                            7899******************************************************.8888888888****************999 PP

                            .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                  START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171
                             g+++l +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++
  SMil_00002781-RA_Salv 268 gGTIELLYMQLYAPTTLAPgRDFWLLRYTSVMDDGSLVVCERSLSNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMN 355
                            9*************************************************9988899******************************* PP

                            --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                  START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205
                            l++++++++lr+l++s+++  +k ++a+l+++++
  SMil_00002781-RA_Salv 356 LEAWSVPEVLRPLYESSTVLSQKATMAALRQLRQ 389
                            *****************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3861882IPR001356Homeobox domain
SMARTSM003891.2E-152086IPR001356Homeobox domain
SuperFamilySSF466891.37E-162285IPR009057Homeodomain-like
CDDcd000861.37E-162383No hitNo description
PfamPF000465.9E-162481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-182581IPR009057Homeodomain-like
CDDcd146864.75E-675114No hitNo description
PROSITE profilePS5084825.535171386IPR002913START domain
CDDcd088759.04E-78175389No hitNo description
SuperFamilySSF559615.49E-38180392No hitNo description
SMARTSM002347.6E-41180390IPR002913START domain
Gene3DG3DSA:3.30.530.206.1E-24180387IPR023393START-like domain
PfamPF018524.8E-53181389IPR002913START domain
PfamPF086701.1E-49701843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MAMSCKESKA AAAAAAAALD NGKYVRYTPE QVEALERLYH DCPKPSSIRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKEASRLQG VNRKLTAMNK LLMEENDRLQ KQVSQLVYEN  120
SYFRQHTQNV RILTRILNLS NKNALSTKDT SCESVVTSGQ QHHLTPQHPP RDASPAGLLS  180
IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV  240
AEILKDRPSW LRDCRAVDVL NVLPTANGGT IELLYMQLYA PTTLAPGRDF WLLRYTSVMD  300
DGSLVVCERS LSNTQNGPSM PPVQNFVRAE MLPSGYLIRP CEGGGSIIHI VDHMNLEAWS  360
VPEVLRPLYE SSTVLSQKAT MAALRQLRQM AQDISQTNIS NWGRRPAALR ALGHRLSRGF  420
NEALNGFSDD GWTLLGNDGM DDVTILVNSN PDKLMGLNIS FTSEYNSICN TILCAKASML  480
LQNVPPAILL RFLREHRSEW ADNIDTYAAS AAKIGPCTFL GTRVGNFGGQ LLEVIKLEGV  540
SHSPEDAMMV RDVFLLQLCS GMDENAVGTC AELIFAPIDA SFAEDAPLLP SGFRIIPLGS  600
SKEASSPNRT LDLASALETG TGGNKPSSDL AVTSSTTRSV MTIAFQFAFE SHMQETVASM  660
ARQYVRSIIS SVQRVALALS STHLGPNAGL RSPLGTPEAH TLARWICQSY RNYMGVELLR  720
SSGEGSESIL KALWHHSDAI MCCSMKAVPV FTFANQAGLD MLETTLVALQ DISLEKIFDD  780
HGRKNLCSEI PQIMHQGFAS LQGGICLSSM SRPISYERAV AWKVLNEDDD PHCFCFMFVN  840
WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072422.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1V0JHU30.0A0A1V0JHU3_SESIN; Homeobox-leucine zipper protein ATHB-15
STRINGMigut.D01005.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]