PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002761-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 381aa    MW: 43066.3 Da    PI: 8.1951
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002761-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-16178229155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  SMil_00002761-RA_Salv 178 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 229
                            89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.73777143IPR001471AP2/ERF domain
SMARTSM003802.8E-1086149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-787144IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-987145IPR016177DNA-binding domain
SuperFamilySSF541711.05E-17178239IPR016177DNA-binding domain
CDDcd000189.54E-24178239No hitNo description
PfamPF008475.0E-12178229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17179238IPR001471AP2/ERF domain
SMARTSM003804.6E-25179243IPR001471AP2/ERF domain
PROSITE profilePS5103218.189179237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MKPKRTRKTI PRDSPPKRSS IYRGVTRFVP KRVEPNTSCR LELDSFKYLV VRARFELLFC  60
CLSSACHPYL ASSARVILDN VDEFGLHRWT GRYEAHLWDK NCWNESQNKK GRQGAYDDEG  120
AAARSYDLAA LKYWGRDTIL NFPVSTYEKE ITEMERQSRE EYIGSLRRKS SGFSRGVSKY  180
RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAAIAY DMAAIEYRGL NAVTNFDLSR  240
YIKWLKPSTA AAATASTSTN PNSDITDANI GSCSSIHDRG TLPPLHQPPD AAAVSRPRPT  300
TATSALGLLL QSSKFKELME MNMAAECPSS PPLQNAVVED DQQTLFESND FCSYNEDIYV  360
DFSSIMHQPI HSLLNGEDSE L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547685.11e-141AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A4D9A7A31e-154A0A4D9A7A3_SALSN; AP2-like factor, ANT lineage
STRINGSolyc12g010490.1.11e-131(Solanum lycopersicum)
STRINGMigut.J01396.1.p1e-131(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.19e-84ARIA-interacting double AP2 domain protein