PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002752-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YB

Protein Properties

Length: 179aa MW: 19407.5 Da PI: 5.7623

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002752-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.6	5.7e-56	15	110	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 reqdrflPianvsrimk+ lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllw ++tlGfe+yv+plk+yl+k SMil_00002752-RA_Salv 15 REQDRFLPIANVSRIMKRGLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWGMTTLGFENYVDPLKLYLQK 102 89************************************************************************************ PP NF-YB 90 yrelegek 97 +r++e+ek SMil_00002752-RA_Salv 103 FRDVEEEK 110 ***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.0E-52	10	122	IPR009072	Histone-fold
SuperFamily	SSF47113	2.64E-39	17	126	IPR009072	Histone-fold
Pfam	PF00808	4.0E-26	20	82	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.3E-20	48	66	No hit	No description
PROSITE pattern	PS00685	0	51	67	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.3E-20	67	85	No hit	No description
PRINTS	PR00615	1.3E-20	86	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MADSDNESGD HRSPREQDRF LPIANVSRIM KRGLPANAKI SKDAKETVQE CVSEFISFIT 60 GEASDKCQRE KRKTINGDDL LWGMTTLGFE NYVDPLKLYL QKFRDVEEEK TVMAGRRDKD 120 SGGDGDGDAD AGFYGLNVMG HQGGPVYGSY HVGATSGTAA ARRGGGAGRS SRLGSFTCD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	4e-48	9	105	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095535.1	1e-73	nuclear transcription factor Y subunit B-3
Swissprot	O23310	5e-69	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A4D9BZK5	3e-78	A0A4D9BZK5_SALSN; Uncharacterized protein
STRING	VIT_19s0015g00440.t01	2e-70	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-68	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]