PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002751-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YB

Protein Properties

Length: 174aa MW: 18791.1 Da PI: 8.0435

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002751-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.7	5.3e-56	10	105	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 reqdrflPianvsrimk+ lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllw ++tlGfe+yv+plk+yl+k SMil_00002751-RA_Salv 10 REQDRFLPIANVSRIMKRGLPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWGMTTLGFENYVDPLKLYLQK 97 89************************************************************************************ PP NF-YB 90 yrelegek 97 +r++e+ek SMil_00002751-RA_Salv 98 FRDVEEEK 105 ***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-51	10	117	IPR009072	Histone-fold
SuperFamily	SSF47113	2.48E-39	12	121	IPR009072	Histone-fold
Pfam	PF00808	3.8E-26	15	77	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-20	43	61	No hit	No description
PROSITE pattern	PS00685	0	46	62	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.2E-20	62	80	No hit	No description
PRINTS	PR00615	1.2E-20	81	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MSRGIIGTPR EQDRFLPIAN VSRIMKRGLP ANAKISKDAK ETVQECVSEF ISFITGEASD 60 KCQREKRKTI NGDDLLWGMT TLGFENYVDP LKLYLQKFRD VEEEKTVMAG RRDKDSGGDG 120 DGDADAGFYG LNVMGHQGGP VYGSYHVGAT SGAAAARRGG GAGRSSRLGS FTCD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	4e-47	10	100	2	92	Transcription factor HapC (Eurofung)
4g92_B	4e-47	10	100	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027930250.1	2e-68	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	9e-64	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A4D9BZK5	3e-73	A0A4D9BZK5_SALSN; Uncharacterized protein
STRING	XP_007142418.1	2e-67	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	7e-63	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]