PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002579-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 358aa    MW: 39495.1 Da    PI: 7.2432
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002579-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.51e-19277311135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+tkTp+WR gp g+ktLCnaCG++y++ +l
  SMil_00002579-RA_Salv 277 CSHCGVTKTPQWRAGPLGSKTLCNACGVRYKSGRL 311
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.14E-15268332No hitNo description
SMARTSM004019.6E-18271325IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.215271307IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.4E-15275309IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.67E-16276324No hitNo description
PROSITE patternPS003440277302IPR000679Zinc finger, GATA-type
PfamPF003201.9E-17277311IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
LHIQIILICL FRFEMLLPNL SLSHSMLYRT HHHPFLYTFN PFSPSPLSSI LLSPPSPRLQ  60
EMECGFIDGF GAEMLKTAGL ADDDLFVDEL LDFSNDLEEH AHGEQHHQLD QPEDKEITTA  120
SSLLLTPPPP DNDDFGSLPE TQLSVPVSQS GGVGKLGMVI PFRGGLIFRL LANRKTAAEA  180
GGRERGCGDG ERTALFHDSS SNQGPNQEGP NRGSNLAHFV AFFHRVVHLV VVLILLDDVV  240
LAPQPLAAPE PDRRVFLGKL AAKKQKKKPA DGQPRRCSHC GVTKTPQWRA GPLGSKTLCN  300
ACGVRYKSGR LLPEYRPACS PTFSIEMHSN NHRRVLEMRR KKESETEAAG PLQPAPNF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100952.15e-50GATA transcription factor 5-like
TrEMBLA0A4D8Z7921e-60A0A4D8Z792_SALSN; Uncharacterized protein
TrEMBLA0A4D9ARL07e-61A0A4D9ARL0_SALSN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-40GATA transcription factor 5