PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00002565-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 332aa MW: 36828.1 Da PI: 7.9408 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.1 | 9.7e-39 | 103 | 162 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ SMil_00002565-RA_Salv 103 PDKIIPCPRCKSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNC 162 7899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-30 | 90 | 160 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-31 | 105 | 161 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.612 | 107 | 161 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 109 | 145 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MKMLNEPEIK LFGRKIYFPE NGAVGERSGE WSNESSGDCD RCLEQSKGQD GEEVGRKEKQ 60 EQRDEEIAEG EICETSAENE ESDGGSESNT KTENSEQKTL KKPDKIIPCP RCKSMDTKFC 120 YYNNYNVNQP RHFCKSCQRY WTAGGTMRNV PVGAGRRKNK NCRHVAADGF HNLSFNPTAT 180 ATATVLSFSH QTDNDHSSIA NQPAAMLPWP FPWNSAVFPP SPMPYYLWNS GGWALGKHPR 240 SGEVVDPQGQ KRRSSIVVPK TLRMDDPEEA ARSSIWSTLG IKYDAISREG LFKALQPKGG 300 DKKPAMAAAA ASPMLQANPA ALSRSLAFQE RA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. A flanking TGT sequence contributes to the specificity of binding. Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The DNA-binding ability is not modulated by 'GIGANTEA' but the stability of CDF1 is controlled by the proteasome-dependent pathway. Ubiquitinated by the SCF(ADO3) E3 ubiquitin ligase complex. Binds to the FT promoter in the morning. {ECO:0000269|PubMed:16002617, ECO:0000269|PubMed:19619493, ECO:0000269|PubMed:22628657}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation at the protein level, but not at the mRNA level. Strongly decreased expression during the dark phase. Accumulates at high levels at the beginning of the day. {ECO:0000269|PubMed:16002617}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021893 | 3e-52 | AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence. | |||
GenBank | AP014966 | 3e-52 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 3e-52 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019199925.1 | 7e-93 | PREDICTED: cyclic dof factor 1-like | ||||
Swissprot | Q8W1E3 | 3e-66 | CDF1_ARATH; Cyclic dof factor 1 | ||||
TrEMBL | A0A4D9C4R9 | 1e-145 | A0A4D9C4R9_SALSN; Dof zinc finger protein DOF5.5 | ||||
STRING | XP_009771503.1 | 9e-90 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 3e-61 | cycling DOF factor 1 |
Publications ? help Back to Top | |||
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