PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002447-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 310aa MW: 34844.4 Da PI: 9.0092

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002447-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.4	7.4e-26	62	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgk 75 +fY+++A +vGFs +++s++s+ +g++++++fvC+++g + e+++ +++ r +r+ ++t+Cka+++vk+++dg+ SMil_00002447-RA_Salv 62 NFYKAHALSVGFSAIIKASRRSRISGKFIDAKFVCTRYGAKPETSSLaesseltrnahvkKKRGRINRSWSKTDCKACMHVKRRQDGR 149 6************************************99998877899***987788888****************** PP FAR1 76 wevtkleleHnHela 90 w v+++++eHnH+l+ SMil_00002447-RA_Salv 150 WIVSSFVKEHNHDLV 164 **********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-24	62	164	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.151	226	262	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.9E-8	226	259	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.6E-8	237	264	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MRLDPPHPST GNRNDSAGVK SCNGGDKPAD SAPIIIDCET SSRKSSEPHE SKEFESKEEA 60 FNFYKAHALS VGFSAIIKAS RRSRISGKFI DAKFVCTRYG AKPETSSLAE SSELTRNAHV 120 KKKRGRINRS WSKTDCKACM HVKRRQDGRW IVSSFVKEHN HDLVIDSSGL RNVCSSNSAQ 180 IYTHAVFKKF QVEVLGVVAC HPKLEGRDDD ATNTFKVHDF EENQVYLVTW NEDTADASCA 240 CRMFEYNGFL CRHVMIVLQI CGVNTIPTKY ILRRWTKNVK NGEGARQVDG IESRNERSVI 300 YTSVLVNLAM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096824.1	2e-54	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Refseq	XP_011096826.1	1e-54	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Refseq	XP_011096827.1	1e-54	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Swissprot	Q5UBY2	6e-42	FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBL	A0A2H5P9N4	1e-103	A0A2H5P9N4_CITUN; Uncharacterized protein
STRING	EOX96877	1e-52	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	4e-39	FAR1 family protein