PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002355-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRF
Protein Properties Length: 313aa    MW: 33800.8 Da    PI: 8.86
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002355-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.7e-2485129145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  SMil_00002355-RA_Salv  85 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 129
                            79****************************************986 PP
2QLQ52.12e-182456234
                    QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34
                           +FT  Ql +L++Q+++yKyL++++PvPp+L+ +
  SMil_00002355-RA_Salv 24 PFTQVQLKELEQQAMIYKYLVSGLPVPPDLVRP 56
                           9*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-82359IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.0912459IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-132456IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.83185129IPR014977WRC domain
PfamPF088795.5E-2186128IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSEKATAVVG GAELGYGGYR AAAPFTQVQL KELEQQAMIY KYLVSGLPVP PDLVRPFHHS  60
SDGLPAHVFN HPALGYCSYY GKKFDPEPGR CRRTDGKKWR CSKDAHPDSK YCERHMHRGR  120
NRSRKPVESQ STSQSSTGGG NGINRGSSQQ MPFYSAVNSR GSSVGSNATK LQMGPISYGI  180
DSREHSFSLE ASGSAGGPSA GSGTCGLMPC HVSSSSLLKQ GPDSRYLGSS SAQQYMTHAF  240
EPINASLSKQ QQQGLFGSDT SSPTTLKQEH LFFSEWPTTK ESWSNLDSEG STKMPSPLLS  300
CPCQLLGHPL ILL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553035.11e-122growth-regulating factor 4-like isoform X3
TrEMBLA0A4D8ZLY01e-153A0A4D8ZLY0_SALSN; Uncharacterized protein
STRINGSolyc08g075950.1.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-41growth-regulating factor 5