PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00002338-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 335aa MW: 37833.1 Da PI: 8.1008 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.1 | 5e-16 | 216 | 316 | 1 | 98 |
EEEE-..-HH.HHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdv.lksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfv 80 f+k+l+ sd+ lk++rl++pk++ae++ g + ++++d +g++We+ ++y+ ++g+ yvl+ G +++ +++ ++gD+v SMil_00002338-RA_Salv 216 FEKILSASDAdLKLARLIIPKRCAENFfpdisG---LHGLRIKIQDIDGNEWEFHYRYWLNGGSriYVLE-GLRDYMVSKKWQSGDTV 299 89999999972466**********888*96633...35668*****************544444448888.***************** PP EEEE-SSSEE..EEEEE- CS B3 81 vFkldgrsefelvvkvfr 98 +F++++ +++ v+++++ SMil_00002338-RA_Salv 300 TFYRVE-PGGKVVMGLRK 316 ***765.66666666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-24 | 212 | 327 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.59E-19 | 213 | 317 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.18E-19 | 214 | 316 | No hit | No description |
SMART | SM01019 | 1.2E-15 | 216 | 318 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-13 | 216 | 315 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.559 | 217 | 318 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 335 aa Download sequence Send to blast |
MAAAAAASSS SSSRMSCFQC QDSSFNPANF RNGWRLRSGE FAQLCPRCAY VRFMVAAAST 60 YLALDQNYCA PLVHFFKTVD QRYFQCSVID IQCCNNLMVY LSAYDDGRFC ETFHSNDDGW 120 RDCGSCGKLV HCGCIVSFST HLLLDFGGII CMECSRLNFL LARKRCMSLE PEVRAREHRP 180 ESSGQAPVEA QNWPQVTDSE LQKVSRNPRA TVTPLFEKIL SASDADLKLA RLIIPKRCAE 240 NFFPDISGLH GLRIKIQDID GNEWEFHYRY WLNGGSRIYV LEGLRDYMVS KKWQSGDTVT 300 FYRVEPGGKV VMGLRKTSGS PQLQRSLHIN HASSM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-42 | 194 | 324 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098358.1 | 1e-156 | B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
TrEMBL | A0A2G9HK54 | 1e-157 | A0A2G9HK54_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H01903.1.p | 1e-134 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12994 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-42 | high-level expression of sugar-inducible gene 2 |