PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002338-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 335aa    MW: 37833.1 Da    PI: 8.1008
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002338-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15e-16216316198
                            EEEE-..-HH.HHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EE CS
                     B3   1 ffkvltpsdv.lksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfv 80 
                            f+k+l+ sd+ lk++rl++pk++ae++     g     +  ++++d +g++We+ ++y+ ++g+  yvl+ G +++  +++ ++gD+v
  SMil_00002338-RA_Salv 216 FEKILSASDAdLKLARLIIPKRCAENFfpdisG---LHGLRIKIQDIDGNEWEFHYRYWLNGGSriYVLE-GLRDYMVSKKWQSGDTV 299
                            89999999972466**********888*96633...35668*****************544444448888.***************** PP

                            EEEE-SSSEE..EEEEE- CS
                     B3  81 vFkldgrsefelvvkvfr 98 
                            +F++++  +++ v+++++
  SMil_00002338-RA_Salv 300 TFYRVE-PGGKVVMGLRK 316
                            ***765.66666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-24212327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-19213317IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-19214316No hitNo description
SMARTSM010191.2E-15216318IPR003340B3 DNA binding domain
PfamPF023628.3E-13216315IPR003340B3 DNA binding domain
PROSITE profilePS508639.559217318IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAAAAAASSS SSSRMSCFQC QDSSFNPANF RNGWRLRSGE FAQLCPRCAY VRFMVAAAST  60
YLALDQNYCA PLVHFFKTVD QRYFQCSVID IQCCNNLMVY LSAYDDGRFC ETFHSNDDGW  120
RDCGSCGKLV HCGCIVSFST HLLLDFGGII CMECSRLNFL LARKRCMSLE PEVRAREHRP  180
ESSGQAPVEA QNWPQVTDSE LQKVSRNPRA TVTPLFEKIL SASDADLKLA RLIIPKRCAE  240
NFFPDISGLH GLRIKIQDID GNEWEFHYRY WLNGGSRIYV LEGLRDYMVS KKWQSGDTVT  300
FYRVEPGGKV VMGLRKTSGS PQLQRSLHIN HASSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-421943242131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098358.11e-156B3 domain-containing protein Os07g0563300-like isoform X1
TrEMBLA0A2G9HK541e-157A0A2G9HK54_9LAMI; Uncharacterized protein
STRINGMigut.H01903.1.p1e-134(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1299499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-42high-level expression of sugar-inducible gene 2