PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00002304-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 124aa MW: 14162 Da PI: 10.1513 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.2 | 5.9e-12 | 87 | 108 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK vk+++fpr SMil_00002304-RA_Salv 87 LDDGYRWRKYGQKAVKNNKFPR 108 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.9E-14 | 72 | 109 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-10 | 79 | 109 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.966 | 82 | 108 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-5 | 87 | 123 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-8 | 88 | 109 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MEDLAPKLFP SSNMAPTSLY KTGNLEAFDF GASSHVAEKP KTESFLSEEN CDRMKISGSV 60 GSGKKKSEQR VRKPRFAFQT RSQVDILDDG YRWRKYGQKA VKNNKFPRYI AIICLRAYHH 120 DSSH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554283.1 | 8e-29 | probable WRKY transcription factor 28 isoform X2 | ||||
Swissprot | Q9C983 | 3e-17 | WRK57_ARATH; Probable WRKY transcription factor 57 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2204 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 4e-20 | WRKY DNA-binding protein 75 |
Publications ? help Back to Top | |||
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