PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002269-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 155aa MW: 16633.9 Da PI: 8.3702

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002269-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.8	2.5e-45	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++r+da++sl+yeAear+rdPvyG+vg i+ lq+q++ SMil_00002269-RA_Salv 10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNELLPHQRDDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVD 97 7************************************************************************************* PP DUF260 89 qlkaelallke 99 +l++el+++++ SMil_00002269-RA_Salv 98 RLQKELDAANA 108 ****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.569	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-44	10	107	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MASSSSYNSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNELLP 60 HQRDDAVNSL AYEAEARVRD PVYGCVGAIS FLQRQVDRLQ KELDAANADL IRFACATGIP 120 PSPAPVGPPR QRPGEYSRRI GDGGGGGGGE SHASL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-66	9	120	10	123	LOB family transfactor Ramosa2.1
5ly0_B	2e-66	9	120	10	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318660.1	2e-85	protein LATERAL ORGAN BOUNDARIES
Refseq	XP_011047821.1	2e-85	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	6e-73	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	B9I3C8	5e-84	B9I3C8_POPTR; Uncharacterized protein
STRING	POPTR_0012s08540.1	8e-85	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	7e-76	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]