PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00002252-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 226aa MW: 24227 Da PI: 6.6366 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6.3e-30 | 21 | 78 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY+ +Hnh+ SMil_00002252-RA_Salv 21 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTTLLITYSCNHNHP 78 99************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-31 | 11 | 80 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.617 | 14 | 80 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 14 | 80 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-34 | 19 | 79 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-25 | 21 | 78 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVPIGDGDGS RSKAEVYPPP DSWSWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS 60 RLDPTTLLIT YSCNHNHPLP TTTKNHHHHH HHHQNPPLPA TTASPAAKPA ITSSSSDTAS 120 PPPAASFPPE ECAASSHQPD IEPCPADNGF VELAGEFGWL CNVGPTIMDG ATLVGPTWGA 180 QADVEFSTPI GEEDKLLFGD LGDLPESAMV FRRHRVEAPC CAGGTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-19 | 21 | 81 | 18 | 80 | Disease resistance protein RRS1 |
5w3x_D | 3e-19 | 21 | 81 | 18 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837543.1 | 1e-105 | PREDICTED: probable WRKY transcription factor 69 | ||||
TrEMBL | A0A2G9HZX0 | 1e-103 | A0A2G9HZX0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00241.1.p | 1e-104 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7468 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 5e-39 | WRKY DNA-binding protein 69 |