PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002104-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 173aa    MW: 19872.4 Da    PI: 10.6939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002104-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-2055105256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                            +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f++ae Aa a++ a+++++g+
  SMil_00002104-RA_Salv  55 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDSAEAAALAYDDAALRFKGH 105
                            7********.**********9...3.35************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.8E-2954109IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1955108IPR016177DNA-binding domain
PfamPF008472.1E-1455105IPR001471AP2/ERF domain
SMARTSM003809.8E-3255117IPR001471AP2/ERF domain
PROSITE profilePS5103222.66955113IPR001471AP2/ERF domain
CDDcd000185.18E-165587No hitNo description
PRINTSPR003672.6E-115667IPR001471AP2/ERF domain
PRINTSPR003672.6E-117894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MHGKRPLSPE EHSFYSPARS HLDMASIVTA LSRVLGCTHT QQQENCAIND QRMRHYRGVR  60
QRPWGKWAAE IRDPNKAARV WLGTFDSAEA AALAYDDAAL RFKGHKAKLL TVTPERVQGR  120
TQFAYLTTQN DINQDHLLRS HHTNFAPSRW RIAYDYTSTR KIGKNSGCKR IRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2154109460ATERF1
3gcc_A1e-2154109460ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248156.11e-40PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH545e-35EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A438EZ176e-42A0A438EZ17_VITVI; Ethylene-responsive transcription factor ERF114
TrEMBLA0A438K9C85e-42A0A438K9C8_VITVI; Ethylene-responsive transcription factor ERF114
STRINGGorai.005G197100.18e-39(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.13e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]