PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002008-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 226aa    MW: 25565.1 Da    PI: 9.6141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002008-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-1976124355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  SMil_00002008-RA_Salv  76 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYLLRG 124
                            8******9.**********955...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.76E-3174134No hitNo description
SMARTSM003806.3E-3575138IPR001471AP2/ERF domain
PROSITE profilePS5103222.31375132IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2275133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3175133IPR001471AP2/ERF domain
PRINTSPR003675.3E-117687IPR001471AP2/ERF domain
PfamPF008474.0E-1276124IPR001471AP2/ERF domain
PRINTSPR003675.3E-1198114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAKKFPKMEA LVEKEHQFNN NSWGNLPNEV VSRTIMNIQL SEFSKESIDY WLSTTKTQPM  60
KSSARKTTSS QGSKLFRGVR QRHWGKWVAE IRLPRNRTRV WLGTFDTAEE AAFAYDTAAY  120
LLRGDYAHLN FPHLKHKIKA NSLCNNTVAL LEAKLKAVAQ AQKQSRSEEE INAKAAERVG  180
EEVIEMKKSS GESIGINGEG DAVHQLSRVP SLDMDMIWDA LLVSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1960133173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091699.14e-78ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ01e-63ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A4D9C1W42e-85A0A4D9C1W4_SALSN; EREBP-like factor
STRINGGorai.011G157500.12e-71(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-42ERF family protein