PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002006-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 367aa    MW: 40134.6 Da    PI: 5.7584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002006-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.8e-09213260455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++iN ++  L++l+P +    +k    a++L + +++++ Lq
  SMil_00002006-RA_Salv 213 SHSLAERARREKINARMKLLQDLVPGC----NKISGTAMVLDEIINHVQALQ 260
                            8*************************9....89999*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15207278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.92E-10207264No hitNo description
Gene3DG3DSA:4.10.280.102.5E-15209277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.526209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6213260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-8215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
LLAELNFGVN LRPQFACCLL ILQIMEPNVE AVQPQFRSGI SGAKPGGMGC VFGDIHGLIP  60
GPPETDGTSF TALLELPPPQ AVELLVKEDF PAKPMPPPIF PSNIALIDRA SMFSVFASAD  120
NPPESTNILS ASSSMKIDSV KQEPLESENQ RNSSSPAVSN QSLKSIKRKE REKKVKESSK  180
KSKKVGANEA SDGSGEQLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQDLVPGCN  240
KISGTAMVLD EIINHVQALQ RQVEFLSMRL AAVNPRIDFN LDALLAVESE SSIDNSYLGM  300
FPPSIWPEGQ INGSRQQQYQ QPWLMDPPSM GRVDDTSNFI TPENSLLSYD SPANSASLHS  360
SQLKMEL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574370.0KP257437.1 Salvia miltiorrhiza clone 4 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078863.10.0transcription factor bHLH48
SwissprotQ8VZ022e-74BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0H3YB140.0A0A0H3YB14_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.K00063.1.p1e-170(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-73bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]