PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001970-RA_Salv
Common NameMYB47
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 286aa    MW: 32090.2 Da    PI: 8.9894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001970-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l+ ++  +G+g +W + ++++g++R++k+c++rw++yl
  SMil_00001970-RA_Salv 14 KGPWSPEEDAKLKSYIDHHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                           79*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.798966IPR017930Myb domain
SuperFamilySSF466893.89E-2011118IPR009057Homeodomain-like
SMARTSM007171.3E-111364IPR001005SANT/Myb domain
PfamPF002493.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241569IPR009057Homeodomain-like
CDDcd001671.12E-81662No hitNo description
PROSITE profilePS500906.00563122IPR017877Myb-like domain
SMARTSM007170.008167124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-1670126IPR009057Homeodomain-like
CDDcd001676.94E-470122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYID HHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGS FSEEEDNIIC SLYISIGSRS SFNLCFLFFK KGIAQLPGRT DNDIKNYWNT  120
RLKKKLLGKH RKDKNARSKL QTTANNFQAP PPPPPPLQPI PYSDEAARFN NHASIRRLLM  180
KLGGRFSSQD PSSSNQYPEI GDQPMYSHPI NDQIIASSDQ TPPLSAAAPP HFGTYPDMQG  240
LEFFYDDLVN SGGEWGEMNP WASSDGIGIC SSPQNEVPWN ILNYHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-19141267108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594010.0KF059401.1 Salvia miltiorrhiza MYB-related transcription factor (MYB47) mRNA, complete cds.
GenBankKF0595110.0KF059511.1 Salvia miltiorrhiza MYB-related transcription factor (MYB47) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021600935.12e-94transcription factor RAX3-like
TrEMBLA0A059PRR40.0A0A059PRR4_SALMI; MYB-related transcription factor
STRINGcassava4.1_011054m8e-94(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-69myb domain protein 84
Publications ? help Back to Top
  1. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]