PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00001970-RA_Salv | ||||||||
Common Name | MYB47 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 286aa MW: 32090.2 Da PI: 8.9894 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ +G+g +W + ++++g++R++k+c++rw++yl SMil_00001970-RA_Salv 14 KGPWSPEEDAKLKSYIDHHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.798 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.89E-20 | 11 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 6.005 | 63 | 122 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0081 | 67 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-16 | 70 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.94E-4 | 70 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKSYID HHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGS FSEEEDNIIC SLYISIGSRS SFNLCFLFFK KGIAQLPGRT DNDIKNYWNT 120 RLKKKLLGKH RKDKNARSKL QTTANNFQAP PPPPPPLQPI PYSDEAARFN NHASIRRLLM 180 KLGGRFSSQD PSSSNQYPEI GDQPMYSHPI NDQIIASSDQ TPPLSAAAPP HFGTYPDMQG 240 LEFFYDDLVN SGGEWGEMNP WASSDGIGIC SSPQNEVPWN ILNYHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-19 | 14 | 126 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059401 | 0.0 | KF059401.1 Salvia miltiorrhiza MYB-related transcription factor (MYB47) mRNA, complete cds. | |||
GenBank | KF059511 | 0.0 | KF059511.1 Salvia miltiorrhiza MYB-related transcription factor (MYB47) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021600935.1 | 2e-94 | transcription factor RAX3-like | ||||
TrEMBL | A0A059PRR4 | 0.0 | A0A059PRR4_SALMI; MYB-related transcription factor | ||||
STRING | cassava4.1_011054m | 8e-94 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-69 | myb domain protein 84 |
Publications ? help Back to Top | |||
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