PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001968-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 362aa    MW: 39797.4 Da    PI: 6.1915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001968-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.4e-1552101255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r +h+  E+rRR++iN++f+ Lrel+P++    ++K + a+ L ++++Y++ Lq
  SMil_00001968-RA_Salv  52 RSKHSVTEQRRRSKINERFQILRELIPHS----DQKRDTASFLLEVIQYVQFLQ 101
                            899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1848122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-2248122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.03150100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-1452105No hitNo description
PfamPF000103.0E-1252101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1156106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
LGGKDQVRMK SGKGHQEEEE EEEEEFGAKK DATSSANNSK DGKNSEKANA IRSKHSVTEQ  60
RRRSKINERF QILRELIPHS DQKRDTASFL LEVIQYVQFL QEKVQKYEGS YQPWNSEPTK  120
LMPWRNSHWR VQNFVGQPQT TKNGPGPGSS FPGRFDENSI GVPMTLQPGQ PNPIEPDHVM  180
DAQGRPIDLH TELSNKSMSM PLPIPVSMGN DGPFSHTLHG PPPSEAQSSD CPSTADALNL  240
QDELTIEGGT ISISSIYSEG LFLFSSILGW RADYVLSLVL DMGSVIRLLA ALTQALQSTG  300
VDLSQASISV QINLGKRANR GATASTAKDH IIPTPSSNQP VGTFHDATSS EDLDVAQKRR  360
KI
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575330.0KP257533.1 Salvia miltiorrhiza clone 100 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151692.11e-144transcription factor BIM2 isoform X2
SwissprotQ9CAA46e-95BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0H3Y8Y90.0A0A0H3Y8Y9_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.L01158.1.p1e-135(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-69BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]