PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00001953-RA_Salv
Common NameWRKY6
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 332aa    MW: 36424.2 Da    PI: 10.1078
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00001953-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-31263320359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh 
  SMil_00001953-RA_Salv 263 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPAMLIVTYEGDHNHA 320
                            99************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.4E-17212259IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.4E-33249320IPR003657WRKY domain
PROSITE profilePS5081130.079256322IPR003657WRKY domain
SuperFamilySSF1182901.09E-26258321IPR003657WRKY domain
SMARTSM007743.4E-37261321IPR003657WRKY domain
PfamPF031069.2E-27263319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAVELMRGYN FTAKMEENAA QEAAAAGLQS VEKLIRLLSH SHQQNQQEPS SSAADYQAVA  60
DVAVDKFKKF ISLLDRSRTG HARFRRGPIP NPPQPRPQPK VEPVTEPVGP PPQPPKTEEK  120
EPGSKIYHPT PIQRLPPLPL PHHHHQLIRN GSLERKESTT TINFSSPANS FLSSVTGDTD  180
SLQPSMSSGF QITNLSQVSS GGRPMASTSS FKRKCSSLDD SSAKCGGASS GSRCHCPKKR  240
KSRLKKVVRV PAISMKMADI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSL RGCPARKHVE  300
RALDDPAMLI VTYEGDHNHA HSNAEALVLE SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21249319271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231290.0KM823129.1 Salvia miltiorrhiza WRKY protein (WRKY6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074403.10.0probable WRKY transcription factor 7
SwissprotQ9STX02e-95WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0D5Y9890.0A0A0D5Y989_SALMI; WRKY protein
STRINGXP_009604893.11e-165(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-58WRKY DNA-binding protein 7